PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00009360-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 36090.7 Da PI: 6.5126 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 7.8e-11 | 18 | 61 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+ Ed +l ++++++G g W+ +++ g+ R++k+ck+rw++yl PSME_00009360-RA 18 TAKEDMILSNYIRLHGDGGWRNLPQKAGLMRCGKSCKLRWLNYL 61 899***************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00009360-RA 67 RGNISPDEEELIIRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTHL 112 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.882 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-5 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.4E-24 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-9 | 18 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-18 | 18 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.18E-6 | 18 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.752 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.16E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MGRSPCSSKH GLKRGASTAK EDMILSNYIR LHGDGGWRNL PQKAGLMRCG KSCKLRWLNY 60 LRPDIKRGNI SPDEEELIIR LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT HLTKKMLSIT 120 QSLENLKNMP ESASLKNYVF ETTPVRIEMA VREPEMVGIK VSKGYDCSYL SSDNAKSLHG 180 KETVNSPRSS SDLLVNDAIV TSEGSPHFDY LAGIPESLFN FNELPSPDSN LLPCQSDSGL 240 EVFCREPVPF ATETNEFYVG YSDKSNVQSV KSFTDADGHV MEDYFDNTQQ VDWIHELGWL 300 LWESQEERER KFQFKGCG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022715268.1 | 1e-67 | transcription repressor MYB6-like | ||||
Swissprot | Q9S9K9 | 2e-57 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V911 | 1e-112 | A0A167V911_PICAB; Transcription factor MYB31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-51 | myb domain protein 3 |