PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009359-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 485aa    MW: 54950.4 Da    PI: 5.5379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009359-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      r +WT  Ed +l d+++++G g W++ +++ g+ R++k+c++rw++yl
  PSME_00009359-RA 14 RVAWTVKEDMILFDYIRLHGDGGWRSLPQKAGLMRCGKSCRLRWLNYL 61
                      679*******************************************97 PP
2Myb_DNA-binding521.6e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00009359-RA  67 RGNISPDEEELIIRLHRLLGNR-WTLIAGRLP-GRTDNEIKNYWNTHL 112
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.294961IPR017930Myb domain
SuperFamilySSF466899.18E-2711108IPR009057Homeodomain-like
SMARTSM007173.1E-91363IPR001005SANT/Myb domain
PfamPF002495.3E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-201668IPR009057Homeodomain-like
CDDcd001673.90E-81661No hitNo description
PROSITE profilePS5129425.68862116IPR017930Myb domain
SMARTSM007173.4E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2569116IPR009057Homeodomain-like
CDDcd001674.25E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSRSPCCSRH GLKRVAWTVK EDMILFDYIR LHGDGGWRSL PQKAGLMRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHRLLGNRWT LIAGRLPGRT DNEIKNYWNT HLTKKMLSIT  120
QSQDNGTENL KTMSESALLK NYVFKTTPVR IETVAREPEM VRINVSKGYG CSYLSSDNAK  180
SLHGQETVKS PRSSCDLIVN DAIITSEGSP HFDYFECLLN LNDLPSPDSN LLPCQSDSGL  240
EEFCREPVPF ATDTNEFYVG YSDQSNVQSV KCFNDADGQV LEDFFDNTQQ VDWIHELDLP  300
KASPQSLGWL LCESQEEREG KFEFEGCGIP ECLLNLNELP SPDSNLLPCQ SDSGLEEFCR  360
EPVPFATETN EFYVGYSDQS NVQSVKCFND ADGSHILHNL RTCSRAGPGV KFDAVWTFLR  420
FFATKYSVGR SARLFMPSVS CMETNAFINC VKSFLFCELK LRIRPSRIVE VEKIVALLVL  480
SALKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-221711610108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9111e-122A0A167V911_PICAB; Transcription factor MYB31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-51myb domain protein 3