PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009357-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 446aa MW: 50970.6 Da PI: 8.0864

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009357-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30	9.1e-10	46	90	14	57
HHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 eL++ ++ ++ + r++L+ +lgL++rq ++WF+ rR k+kk PSME_00009357-RA 46 ELQQKHRNtIEKVMPSVRADLSLQLGLSDRQLQMWFCHRRLKDKK 90 66666666567777889**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0014	32	95	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-7	46	90	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.8E-8	46	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-7	61	92	IPR009057	Homeodomain-like
CDD	cd00086	5.48E-4	63	85	No hit	No description
PROSITE profile	PS50071	10.576	63	91	IPR001356	Homeobox domain
Pfam	PF08436	3.6E-20	237	284	IPR013644	1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal
SuperFamily	SSF55347	7.85E-31	237	319	No hit	No description
Pfam	PF13288	9.6E-28	316	431	IPR026877	DXP reductoisomerase C-terminal domain
SuperFamily	SSF69055	1.11E-21	349	438	IPR026877	DXP reductoisomerase C-terminal domain
Gene3D	G3DSA:1.10.1740.10	1.4E-19	362	436	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
TTFRRDEVLE SWKSRWWFFG KRRIFDGKGV RASTKASVDH QLKVSELQQK HRNTIEKVMP 60 SVRADLSLQL GLSDRQLQMW FCHRRLKDKK EKEKEKEKEK EKQPKKEKAK HAPPPAPAHS 120 AYLMPTSTKT NFYDDYDARK RPTLKLNFEE GGGWKKKSQV QNLHLHPTSL LQAIATVEAH 180 LGEPLRDDGP ILGVEFDQLP PGAFGSRIAN PKVDFFEAGG FFDDFECLLT IQLRKGDWPM 240 EKLKEVKFVD ALKHPNWNMG KKITVESTTL FNKGLEVIEA HYLYGVDYDN IEIMIHPQLI 300 IHSMVVTQDS SILAQLGLPD MQLPILYTMS CPERISCSEI TWPRLDLCKL GSLSFKAPDC 360 VKYPSIDLSY SAGRAGGTMT GVLSAANEKA VEISYLDIFK IVEMTCEKHK NELLHQPSLE 420 EIIHYDQWAK NYAASLEKSI LEPVTV

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

TTFRRDEVLE SWKSRWWFFG KRRIFDGKGV RASTKASVDH QLKVSELQQK HRNTIEKVMP  60
SVRADLSLQL GLSDRQLQMW FCHRRLKDKK EKEKEKEKEK EKQPKKEKAK HAPPPAPAHS  120
AYLMPTSTKT NFYDDYDARK RPTLKLNFEE GGGWKKKSQV QNLHLHPTSL LQAIATVEAH  180
LGEPLRDDGP ILGVEFDQLP PGAFGSRIAN PKVDFFEAGG FFDDFECLLT IQLRKGDWPM  240
EKLKEVKFVD ALKHPNWNMG KKITVESTTL FNKGLEVIEA HYLYGVDYDN IEIMIHPQLI  300
IHSMVVTQDS SILAQLGLPD MQLPILYTMS CPERISCSEI TWPRLDLCKL GSLSFKAPDC  360
VKYPSIDLSY SAGRAGGTMT GVLSAANEKA VEISYLDIFK IVEMTCEKHK NELLHQPSLE  420
EIIHYDQWAK NYAASLEKSI LEPVTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4y6p_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6p_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6r_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6r_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6s_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6s_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
5jaz_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jaz_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jbi_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jbi_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jc1_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jc1_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmp_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmp_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmw_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmw_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jnl_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jnl_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jo0_A	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jo0_B	2e-43	237	436	210	415	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	90	RRLKDKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT071087	0.0	BT071087.1 Picea sitchensis clone WS02770_C07 unknown mRNA.
GenBank	BT107441	0.0	BT107441.1 Picea glauca clone GQ03107_I22 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	8e-20	Homeodomain-like transcriptional regulator