PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009319-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 28077.4 Da PI: 10.6342 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.6e-11 | 7 | 57 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+ l ++v+++G+g W++I r R+ ++k++w++ PSME_00009319-RA 7 KQKWTHEEEAALRNGVEKYGPGKWRAILRDPTwssclASRSNVDLKDKWRN 57 79****************************99*****9************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.976 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-16 | 4 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-7 | 6 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-8 | 7 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-14 | 7 | 58 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.82E-18 | 8 | 58 | No hit | No description |
SMART | SM00526 | 8.3E-13 | 131 | 196 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 23.309 | 132 | 201 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 8.71E-14 | 136 | 214 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.3E-17 | 138 | 216 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.5E-11 | 138 | 204 | IPR005818 | Linker histone H1/H5, domain H15 |
CDD | cd00073 | 5.88E-11 | 140 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MQMGAPKQKW THEEEAALRN GVEKYGPGKW RAILRDPTWS SCLASRSNVD LKDKWRNMSV 60 TANGWGSREK ARLALKRSKS IAKQSGRQLA LSALNNGNMD VVLVTKPLTT VNPYLPSSNK 120 RCISRLCNSM SICLSRLDKL ILDAVSTLKE PNGSSKSAIA TYIEENQYPP PNFRRMLSSK 180 LKSLVISEKL VKIRQNYMIS GSFRSDDEKA SKSEKEEKHV TILSKNTSKK NKFSFDPVIM 240 FISFSQQEV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113024 | 1e-165 | BT113024.1 Picea glauca clone GQ03324_K18 mRNA sequence. | |||
GenBank | EF678384 | 1e-165 | EF678384.1 Picea sitchensis clone WS02919_A17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011623052.1 | 8e-76 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_011623053.1 | 7e-76 | telomere repeat-binding factor 1 isoform X2 | ||||
Refseq | XP_011623054.1 | 7e-76 | telomere repeat-binding factor 1 isoform X2 | ||||
Swissprot | Q8VWK4 | 4e-60 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | B8LR63 | 1e-135 | B8LR63_PICSI; Uncharacterized protein | ||||
STRING | ERN05352 | 4e-75 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-62 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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