PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009079-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 369aa    MW: 41881 Da    PI: 4.9837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009079-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21e-5561331128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhP+deelv +yLk+kv+g+k+el ++i+evd+yk+ePwdLp k  + +++ ewyfFs+rdkky++g+r+nrat++gyWkatgkd++
  PSME_00009079-RA   6 LPPGFRFHPSDEELVGYYLKRKVHGRKIEL-DIIPEVDLYKCEPWDLPdKsFLPNRDLEWYFFSPRDKKYPNGTRTNRATDAGYWKATGKDRK 97 
                       79****************************.99**************95434455677*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + s k++ +g+kktLvfy grap+g++tdWvmheyrl
  PSME_00009079-RA  98 INS-KSSMIGTKKTLVFYGGRAPQGRRTDWVMHEYRL 133
                       ***.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-644156IPR003441NAC domain
PROSITE profilePS5100561.3856156IPR003441NAC domain
PfamPF023659.2E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPSDEELV GYYLKRKVHG RKIELDIIPE VDLYKCEPWD LPDKSFLPNR  60
DLEWYFFSPR DKKYPNGTRT NRATDAGYWK ATGKDRKINS KSSMIGTKKT LVFYGGRAPQ  120
GRRTDWVMHE YRLDETQCEG AAGVQDAFVL CRVFKKNGIE PRVGCCNELP IQKSALPSEM  180
NNSFSDKMNK IGASQDLSDK GYTQVKQEEA VIQANPTLQS ETSSETLNDR TDNGAPLNQW  240
LQFLLDEPNP TYILTSPANA RHDLTVSSML GGARLEQESL WPMLKIDNFS EGLAELSFNQ  300
ITSQIEPMLS HTMDACFEEE DVLDKLRNAV QASQAENAHN ENSFFVAKLS RNLVGDSLQF  360
DNTYNLWEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-56115712166NO APICAL MERISTEM PROTEIN
1ut4_B4e-56115712166NO APICAL MERISTEM PROTEIN
1ut7_A4e-56115712166NO APICAL MERISTEM PROTEIN
1ut7_B4e-56115712166NO APICAL MERISTEM PROTEIN
3swm_A4e-56115715169NAC domain-containing protein 19
3swm_B4e-56115715169NAC domain-containing protein 19
3swm_C4e-56115715169NAC domain-containing protein 19
3swm_D4e-56115715169NAC domain-containing protein 19
3swp_A4e-56115715169NAC domain-containing protein 19
3swp_B4e-56115715169NAC domain-containing protein 19
3swp_C4e-56115715169NAC domain-containing protein 19
3swp_D4e-56115715169NAC domain-containing protein 19
4dul_A4e-56115712166NAC domain-containing protein 19
4dul_B4e-56115712166NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028066844.11e-103NAC domain-containing protein 45 isoform X2
STRINGXP_010528598.11e-101(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.17e-95NAC domain containing protein 28