PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009011-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HSF | ||||||||
Protein Properties | Length: 245aa MW: 28126.6 Da PI: 7.8675 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.2 | 1.8e-35 | 13 | 104 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d++++ ++sws ++nsf+v++++ef+ +Lp+yFkhsnf+SFvRQLn+YgF+k++ e+ weF+++ F +g+++ll PSME_00009011-RA 13 FLTKTYDMVDDPATNAMVSWSPSSNSFIVWNPTEFSGVLLPTYFKHSNFSSFVRQLNTYGFHKIDPER---------WEFANEGFLRGHRHLL 96 9********************999*****************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+r+k PSME_00009011-RA 97 KNIHRRKP 104 *****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.26E-35 | 8 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-38 | 9 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-59 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-31 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPPNGSSNGP PPFLTKTYDM VDDPATNAMV SWSPSSNSFI VWNPTEFSGV LLPTYFKHSN 60 FSSFVRQLNT YGFHKIDPER WEFANEGFLR GHRHLLKNIH RRKPVHSHSQ QQQKGESLSG 120 GACVEIKQLE DETEKLRQEK QGLVIELVRL KQHQQGTEFD LQSMEERLQV MEQRQHRMMA 180 FLAKAVQNPN FVAQLVQHHD KIAHIATTNK KRRLPNHDEV LEIGENGCTG SQIVRYDHDS 240 ASYIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-26 | 1 | 102 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-26 | 1 | 102 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-26 | 1 | 102 | 14 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117589 | 0.0 | BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006854048.2 | 1e-100 | heat stress transcription factor A-1 isoform X1 | ||||
Swissprot | Q84T61 | 5e-90 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A0D6R070 | 1e-100 | A0A0D6R070_ARACU; Uncharacterized protein | ||||
STRING | ERN15515 | 3e-99 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 2e-86 | heat shock factor 3 |
Publications ? help Back to Top | |||
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