PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008680-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 476aa MW: 53403.4 Da PI: 7.814 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.6e-16 | 69 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll + ++ +G g+W++ +++ g++R++k+c++rw++yl PSME_00008680-RA 69 KGAWSAEEDSLLGKFIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYL 116 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 122 | 166 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ Tt+E+el+++ +++lG++ W+ Ia +++ gRt++++k++w++ PSME_00008680-RA 122 RGNITTDEEELIIRMHALLGNR-WSIIAGRVP-GRTDNEIKNYWNTN 166 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.378 | 64 | 116 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-28 | 66 | 163 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 68 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 69 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 70 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-9 | 71 | 116 | No hit | No description |
PROSITE profile | PS51294 | 24.723 | 117 | 171 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-15 | 121 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 122 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 124 | 171 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-10 | 126 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MAAESHRKRG LLPARSLSIG QFHHQQARIA SSGYVSSAFQ LASPCSRVSH SRKLEMGRAP 60 CCSKVGLNKG AWSAEEDSLL GKFIQTHGEG NWRSLPKKAG LRRCGKSCRL RWLNYLRPSI 120 KRGNITTDEE ELIIRMHALL GNRWSIIAGR VPGRTDNEIK NYWNTNLSKK LAVRGIDPKT 180 HKKITTTDSI NNRVSDLFNQ RKLGEKQYDS SQRSQQLERN ATRAGQSTVL VIPNVHNLKA 240 DLKGQYLAGP RDQTKGSNMI RSCSAINKPI IEPNSNELTA AADSIFRCSS ASDKSSKSIH 300 PDFIQPQPVV SSDTAGKKTD DSTVYCSSDS AAGSCCLIDH RYLSLEENSN ERYSDTPAEE 360 CTGSLSISNP YTHSYSEAAI CDSREHINAC HAQKHDQFHE YDIFSLFDVR NAENEICCND 420 DQWVQEQGAE YMQKDQDLPQ LHGWDKQIED PEKEHFGSNV VNNDVTTMSW DSSFWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-23 | 67 | 171 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | PMU39448 | 0.0 | U39448.1 Picea mariana MYB-like transcriptional factor MBF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q40920 | 0.0 | Q40920_PICMA; MYB-like transcriptional factor MBF1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-65 | myb domain protein 6 |