PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008670-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 90aa MW: 10710.1 Da PI: 8.1929 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.4 | 5.3e-10 | 21 | 65 | 54 | 94 |
NAM 54 eekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevls 94 ++ +wyfFs+rdkky++g+r+nrat+ ++yW+ + + ev+ PSME_00008670-RA 21 RDLKWYFFSPRDKKYPNGTRTNRATEgwllESYWEGQENYLEVIY 65 5669********************99899899**98877666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.188 | 1 | 90 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-8 | 19 | 55 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MLQHLTQFLC LFADKSFLPN RDLKWYFFSP RDKKYPNGTR TNRATEGWLL ESYWEGQENY 60 LEVIYDWNKE DPSLLRGACT IGKKNRLGDA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008779619.1 | 8e-14 | NAC domain containing protein 50-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 5e-15 | NAC domain containing protein 28 |