PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008395-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 415aa    MW: 46292.1 Da    PI: 5.9366
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008395-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.47.1e-37491852128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya..........tgkrknratksgy 82 
                       ppGf FhPtde l ++yLk kv g + ++ +vi+e+d y++ePwdLp k   + +  + yfFs+r+ + +          +g+rk rat+ gy
  PSME_00008395-RA  49 PPGFCFHPTDEVLFTHYLKSKVYGWPQPC-NVISEADPYECEPWDLPVKPGRNGRylKGYFFSPRKGECSsgspkkgecsSGSRKIRATTVGY 140
                       8*************************999.99***************655555553466*******99995555555554555********** PP

               NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       Wk tg+d+++ + +++  g+kktLvfy+g a++ +kt+W mhey l
  PSME_00008395-RA 141 WKVTGEDRTISA-SSKILGIKKTLVFYRGCAHHEKKTNWRMHEYIL 185
                       **********99.9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4542211IPR003441NAC domain
PROSITE profilePS5100542.96648211IPR003441NAC domain
PfamPF023652.2E-2149184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MRIPCQGSIT ESVAEAFPLW SIVEHTRPKK GYLSWNIPVV SVMGHFSQPP GFCFHPTDEV  60
LFTHYLKSKV YGWPQPCNVI SEADPYECEP WDLPVKPGRN GRYLKGYFFS PRKGECSSGS  120
PKKGECSSGS RKIRATTVGY WKVTGEDRTI SASSKILGIK KTLVFYRGCA HHEKKTNWRM  180
HEYILDDCNS TSSNPVQARA QSYVLCKVFQ KNIPKKCKHC CAASSQVEET GYPDGEHGKM  240
ASLDIHNIAQ TTNDVNIIPD GTLQGQVMKE VPALQGNLVV TDSDDPKLYS KENGRIAQSV  300
FSTQPQQFVD TNLEKGTSAD EQKPMQDCNK DDDGIWHFQD TLVVEGDNSR FCSSLPAQHD  360
LFLDVSDGDF IELNDLIMTP LEVDSDTDGQ VCNSMGELPD GCKLRRNLEV IFVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-304421111168Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.14e-42NAC domain containing protein 28