PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008382-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 869aa    MW: 95574.1 Da    PI: 6.7792
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008382-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.9e-106116491854
                       HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +Fe   n+yps +++  LA+k+gL+ +qV++WF N R +
  PSME_00008382-RA 611 MFEHflNPYPSDADKHMLARKTGLSRNQVSNWFINARVR 649
                       5775569******************************88 PP
2BELL91.11.1e-29474542472
              BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +lqk+k  Ll ll+eV+++Y+qy++  ++vissFe +ag+g+a+pY + A+ka+SrhFrcLkdai++q+
  PSME_00008382-RA 474 ALQKRKKELLWLLDEVHRQYRQYCDHRKMVISSFESIAGMGAATPYLAPASKAMSRHFRCLKDAIKDQV 542
                       69****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-23371540IPR006563POX domain
PfamPF075262.2E-32377538IPR006563POX domain
PROSITE profilePS5007112.649590653IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27592665IPR009057Homeodomain-like
SMARTSM003893.2E-8593657IPR001356Homeobox domain
CDDcd000863.02E-13593654No hitNo description
SuperFamilySSF466893.81E-17595660IPR009057Homeodomain-like
PfamPF059202.4E-18610649IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MSHRFSSHLN QSGIADDMPG MYADQSQMMF PEIFSFPNSI ELLGVPARDD QGVSGSKLGA  60
ISNWSRVSDG QQSHEWSHMA PKYISNEFSG GTQNMAVGGS MQFNSMGGMV KEGNMQTLHN  120
LQAQADAMQL CLMNPGNGEY SGLGLPTNMG ISNPSNGVEH HQTGMNSQKH YGELANQFST  180
FSQSISADGN IEQLPTNTRE SPQTPWQSRV NELHLLPGGN GSLQNNQFAT SQLNNTLNWA  240
NRHAGSSPYN STHWNEEPVE AKVAGAFGSR DDRFAQGLAL SLSSNSQIQV QPLETRRPIS  300
AQDMVSRLQA NADVKSKSVD VKGTNGFGWF SSYNSAGSDG ILMPAKGSAF LTPRAADSVH  360
ANMGTSELAA ARYGVLLENP KYMKVTQELF DELSNLVGIG DTTINSTVIS NQDRHKLQKN  420
SSFGSRNIHD PVSVSAGPKV GFYNPINATP SSSTVPTEMR NAKEQRISSG DLLALQKRKK  480
ELLWLLDEVH RQYRQYCDHR KMVISSFESI AGMGAATPYL APASKAMSRH FRCLKDAIKD  540
QVKATCELLG EKESAGGPGT TKGETPRLRF LEQSLRQQRA FQQVGMIPEQ EAWRPQKGLP  600
QHAISVLRAW MFEHFLNPYP SDADKHMLAR KTGLSRNQVS NWFINARVRL WKPMIEDMYQ  660
EELKEAEKND GGQSEKQQIA TFTVGKNDEK GTNKHGKTPE GDGDHKQYSE DSDSEDFKND  720
LSQNRQGSTG AAVSLPLDSS VVQEENFDGN IRSGVVHQII TAREAESNMP TPNPMIARIK  780
GKQEENCDPE HSNENTNVPR SEVGLQFSSN YNHLSGTSSG VLYYPQDLKS AQFGSSDPVS  840
LTLGLRHGGS RSIPVADQEK YQKSLYPSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-15599656158Homeobox protein Meis1
4xrs_B6e-15599656158Homeobox protein Meis1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.33e-91BEL1-like homeodomain 4