PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008240-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 218aa MW: 25135 Da PI: 6.5115 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.9 | 9.1e-28 | 22 | 132 | 2 | 112 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+ +yLkk+++g++ l+++ +i ++diy+++P +Lp +++ ek+w+fF++r++k+ r +r t sgyWkat +d+ + PSME_00008240-RA 22 IPGFRFYPTEEELLRFYLKKRIQGSHqLKFDIIILTLDIYRYDPCELPgLAIDVAEKQWFFFVPRESKKC--ARLTRLTVSGYWKATSSDRGI 112 69**********************9956665569999***********77888999*********99875..7******************** PP NAM 93 lskkgelvglkktLvfykgr 112 + e +glkktL r PSME_00008240-RA 113 RIELLECIGLKKTLKVLALR 132 **99999*******877444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-26 | 14 | 130 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.113 | 21 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-15 | 23 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MTMAILDEIY NDGAFKGELT VIPGFRFYPT EEELLRFYLK KRIQGSHQLK FDIIILTLDI 60 YRYDPCELPG LAIDVAEKQW FFFVPRESKK CARLTRLTVS GYWKATSSDR GIRIELLECI 120 GLKKTLKVLA LRKENWLLIS ARDEYEKKCH SIYLDGSSCQ SSPMTEATSP MTESRGVYLN 180 LSKMNNEDNQ IQCVEHIMSS EETLVWNVGG IVPTHSYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-21 | 18 | 142 | 14 | 141 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-21 | 18 | 142 | 14 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-21 | 18 | 142 | 14 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-21 | 18 | 142 | 14 | 141 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-21 | 18 | 142 | 14 | 141 | NAC domain-containing protein 19 |
4dul_B | 3e-21 | 18 | 142 | 14 | 141 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598401.1 | 3e-35 | NAC domain-containing protein 35-like, partial | ||||
Refseq | XP_022897039.1 | 8e-35 | NAC domain-containing protein 35-like | ||||
TrEMBL | A0A075M5N5 | 9e-53 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | Migut.N00873.1.p | 3e-33 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 3e-35 | NAC domain containing protein 35 |