PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008238-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 21501 Da PI: 7.1308 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.2 | 5.3e-43 | 29 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +GfrF Pt+eelv++yLkk+++g + l++ ++ i+++diy+++Pw+Lp +++ ek+w+fF++r++k+ r++r t sgyWkatg+d++ PSME_00008238-RA 29 IAGFRFYPTEEELVNFYLKKRIQGGQqLNF-DIlIPTLDIYRYDPWELPgLAIDVAEKQWFFFVPRESKKC--VRPTRLTVSGYWKATGSDRK 118 58*********************9994555.555***************77888999*********99875..7******************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ e +glkk+Lvfykg+ap +++tdW+m+eyr+ PSME_00008238-RA 119 IRNELLECIGLKKSLVFYKGKAPLAQRTDWIMNEYRM 155 ***99999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-42 | 20 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.713 | 28 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-24 | 30 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSNIEPMAMA ILEEIYNDAG AFMGELTVIA GFRFYPTEEE LVNFYLKKRI QGGQQLNFDI 60 LIPTLDIYRY DPWELPGLAI DVAEKQWFFF VPRESKKCVR PTRLTVSGYW KATGSDRKIR 120 NELLECIGLK KSLVFYKGKA PLAQRTDWIM NEYRMPDFSS SLPKIMKKCK LACADEEHGY 180 GVMSDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-35 | 23 | 155 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-35 | 23 | 155 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-35 | 23 | 155 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-35 | 23 | 155 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
3swm_B | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
3swm_C | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
3swm_D | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
3swp_A | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
3swp_B | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
3swp_C | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
3swp_D | 3e-35 | 23 | 155 | 15 | 145 | NAC domain-containing protein 19 |
4dul_A | 2e-35 | 23 | 155 | 12 | 142 | NAC domain-containing protein 19 |
4dul_B | 2e-35 | 23 | 155 | 12 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842307.1 | 3e-50 | PREDICTED: putative NAC domain-containing protein 94 | ||||
Refseq | XP_020598401.1 | 6e-52 | NAC domain-containing protein 35-like, partial | ||||
Refseq | XP_020689448.1 | 9e-51 | NAC domain-containing protein 35 isoform X1 | ||||
Refseq | XP_022897039.1 | 2e-50 | NAC domain-containing protein 35-like | ||||
Refseq | XP_028555611.1 | 5e-52 | NAC domain-containing protein 35 isoform X2 | ||||
Swissprot | Q9ZVP8 | 2e-49 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A075M5N5 | 1e-71 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | XP_008382796.1 | 5e-50 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 7e-52 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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