PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00008236-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 264aa MW: 30515.1 Da PI: 8.1687

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00008236-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.1	1.3e-43	59	185	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+++yLkk+++g + +++ i+++d+y+++Pw+Lp +++ ek+w+fF++r++k++ r++r t sgyWkatg+d+++ PSME_00008236-RA 59 IPGFRFYPTEEELLSFYLKKRIQGGQQVNFDIiIRTLDMYRYDPWELPgLAIDVAEKQWFFFVPRESKKS--ARPTRLTVSGYWKATGSDRAI 149 69*******************99955555549999*******77888999*****99875..7**************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ e +glkktLvfykg+ap g++tdW+m+eyr+ PSME_00008236-RA 150 RNELLECIGLKKTLVFYKGKAPLGQRTDWIMNEYRM 185 99999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-46	51	208	IPR003441	NAC domain
PROSITE profile	PS51005	50.942	58	208	IPR003441	NAC domain
Pfam	PF02365	1.3E-23	60	185	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
WRTCGRLLYA LSRSEISIYA EHVEAIYVIC SPDQIEQMAM AILEEIYNDG AFKGELPVIP 60 GFRFYPTEEE LLSFYLKKRI QGGQQVNFDI IIRTLDMYRY DPWELPGLAI DVAEKQWFFF 120 VPRESKKSAR PTRLTVSGYW KATGSDRAIR NELLECIGLK KTLVFYKGKA PLGQRTDWIM 180 NEYRMPDLAS SPPKIKNTDM VLCRIYKKAA SQKSMEQRTE SVGVETTIST LHYNANKGIY 240 LNFSKMNNED HNQIQCVQSI MSSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	55	211	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	55	211	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	55	211	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	55	211	14	168	NO APICAL MERISTEM PROTEIN
4dul_A	2e-43	55	211	14	168	NAC domain-containing protein 19
4dul_B	2e-43	55	211	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT109581	1e-168	BT109581.1 Picea glauca clone GQ03210_D16 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008813634.1	2e-62	NAC domain-containing protein 22-like isoform X1
Swissprot	Q9ZVP8	3e-57	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A075M5N5	1e-88	A0A075M5N5_9SPER; NAC domain protein
STRING	Pavir.J01198.1.p	1e-63	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-59	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]