PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00008235-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 283aa MW: 32992.5 Da PI: 9.7907

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00008235-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.5	5.3e-40	20	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrF Pt+ee+v +yLkk+v+g+ l+++ +i+++d+y+++PwdLp + + +e++w+fF+krd k+ r++r t sgyWk+ g d++ PSME_00008235-RA 20 IPGFRFYPTEEEIVGFYLKKRVQGSVhqLNFDLIIPTLDLYRLDPWDLPgLANDVGERQWFFFAKRDCKKC--ARPTRLTVSGYWKTMGLDRT 110 69********************9943444446***********555566999****99875..7*************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +glkktLvfykg++p g++t W+m+eyr+ PSME_00008235-RA 111 IRNDFLQCIGLKKTLVFYKGKSPPGQRTGWIMNEYRM 147 99999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-41	12	150	IPR003441	NAC domain
PROSITE profile	PS51005	44.047	19	177	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDTLEKMYND GAVQAELPVI PGFRFYPTEE EIVGFYLKKR VQGSVHQLNF DLIIPTLDLY 60 RLDPWDLPGL ANDVGERQWF FFAKRDCKKC ARPTRLTVSG YWKTMGLDRT IRNDFLQCIG 120 LKKTLVFYKG KSPPGQRTGW IMNEYRMPDL SSSFPKECKL ACADQEDGYG GMWIYIKAAS 180 HKLMEQRTKR DRIEKGKLVM NTNKSFIRST SLGAYSNQIQ LQGPLYFLDY VIMRIRMYYV 240 ILMLVKGTMN RRFENKKGVC SHVSKILSNQ ASQFEYLGPM MFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-33	9	147	9	142	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-33	9	147	9	142	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-33	9	147	9	142	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-33	9	147	9	142	NO APICAL MERISTEM PROTEIN
3swm_A	8e-33	9	147	12	145	NAC domain-containing protein 19
3swm_B	8e-33	9	147	12	145	NAC domain-containing protein 19
3swm_C	8e-33	9	147	12	145	NAC domain-containing protein 19
3swm_D	8e-33	9	147	12	145	NAC domain-containing protein 19
3swp_A	8e-33	9	147	12	145	NAC domain-containing protein 19
3swp_B	8e-33	9	147	12	145	NAC domain-containing protein 19
3swp_C	8e-33	9	147	12	145	NAC domain-containing protein 19
3swp_D	8e-33	9	147	12	145	NAC domain-containing protein 19
4dul_A	7e-33	9	147	9	142	NAC domain-containing protein 19
4dul_B	7e-33	9	147	9	142	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	1e-48	NAC domain-containing protein 22-like
STRING	XP_008791987.1	5e-48	(Phoenix dactylifera)
STRING	MLOC_65456.1	1e-46	(Hordeum vulgare)
STRING	TRIUR3_33949-P1	2e-47	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	6e-48	NAC domain containing protein 35