PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008234-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 25587.5 Da PI: 8.7432 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.4 | 4.6e-43 | 19 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l pGfrF Pt+eelv +yLkk+v+g + l+++ ++++vd+y+++PwdLp + + +e++w+fF++r+ k+ r++r t sgyWk+tg+d++ PSME_00008234-RA 19 LIPGFRFYPTEEELVGFYLKKRVQGGHqLNFDLIMPTVDLYRYDPWDLPgLANDVGERQWFFFVPREYKK--CARPTRLTVSGYWKTTGSDRA 109 579*********************99945554459**************555566999*******97765..68******************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +glkktLvfykg+ap g++tdW+m+eyr+ PSME_00008234-RA 110 IRNDLLQCIGLKKTLVFYKGKAPLGQRTDWIMNEYRM 146 ***99999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-48 | 8 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.744 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-24 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDTVEEMYNE GAVQAELPLI PGFRFYPTEE ELVGFYLKKR VQGGHQLNFD LIMPTVDLYR 60 YDPWDLPGLA NDVGERQWFF FVPREYKKCA RPTRLTVSGY WKTTGSDRAI RNDLLQCIGL 120 KKTLVFYKGK APLGQRTDWI MNEYRMPDLS SSSPKIKKMD MVVCRIYIKA ASHKSMEQRT 180 KHDRIEKGKL VVSAGDEYEQ KCHSINCQSN PTTEATVCRP L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-42 | 15 | 172 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-42 | 15 | 172 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-42 | 15 | 172 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-42 | 15 | 172 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-42 | 15 | 174 | 16 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-42 | 15 | 172 | 13 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-42 | 15 | 172 | 13 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344533.1 | 9e-60 | uncharacterized protein LOC100501100 | ||||
Refseq | XP_008791987.1 | 4e-60 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 9e-57 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A075M5N5 | 1e-91 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | GRMZM2G389557_P01 | 9e-60 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 5e-56 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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