PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008136-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bZIP | ||||||||
Protein Properties | Length: 572aa MW: 62598.5 Da PI: 9.0361 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.2 | 8.5e-09 | 371 | 409 | 25 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +ae+eeL+e+v +L+aeN L+ e+++l++e +klks++ PSME_00008136-RA 371 QAECEELAERVGTLKAENVVLRTEMNRLEQEHKKLKSDN 409 89***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.5E-15 | 126 | 185 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 2.5E-11 | 219 | 328 | No hit | No description |
CDD | cd14702 | 3.90E-6 | 371 | 402 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-4 | 371 | 407 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MEEVLFFIFS NLHDIAFSDC GIHGKVIKQT SRYPSWIMGT GEMGRLNRTE KASTTKVICT 60 LKLFVVAVSI ESIVVNVIAT SKKVVVLIGN KLPLPLPWFT LIGLLHFRQW QSLDLVSSPL 120 PNLCLAYYSS ATTPMPPPGY FHSTMALSPQ PHPYMRGVQP LMPLYGTPPT LYAALYTHGG 180 MYANAPGAHP YGPYGIPPPG VINESAAGVS TGITEAMTKF SGVKDQSPPK SSETGSEGSS 240 EECDDSSQNG SSAEQKISSG QASMVHTVNT TTRSQGGTGH AASGGKETNT SVDQAIAAMP 300 ISVAGKSATV TGLTINLNIG IGYWSMSAPT PISAICGRRP CAPLTTGLVP SAQNMPLIGH 360 PDSLPTELWL QAECEELAER VGTLKAENVV LRTEMNRLEQ EHKKLKSDNA SLRKTLLRTD 420 SEWFSIYFGK LKEKKIKTEH EKSKNSMSQI PTALLIIEDV TQTSTVAPIP RDGRRETEDL 480 GLELHVIIYQ LLVEVQDPGI IRFRFNFVKA AMLQLRDIRF LLSYIKAAML YPPLSLTLIP 540 LKIRFRFNFV KAAMLQLRDI RFLLSYIKAA ML |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102321 | 1e-107 | BT102321.1 Picea glauca clone GQ0178_P15 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 2e-24 | basic region/leucine zipper transcription factor 16 |