PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008095-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 159aa MW: 18101.5 Da PI: 9.7647 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.2 | 4.8e-17 | 8 | 63 | 54 | 108 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvf 108 +ekewyfF++rd+ky++g+r++ra+ sgyWkatg dk++ +k +++ v k+t vf PSME_00008095-RA 8 GEKEWYFFTPRDRKYPNGSRPKRAAGSGYWKATGADKPINAKgGKKRVVAKRTSVF 63 689**************************************965666888998888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.965 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-17 | 3 | 62 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-6 | 11 | 64 | IPR003441 | NAC domain |
SuperFamily | SSF47661 | 2.63E-11 | 59 | 142 | IPR010989 | t-SNARE |
Gene3D | G3DSA:1.20.58.70 | 2.5E-11 | 60 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016192 | Biological Process | vesicle-mediated transport | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MTDKALFGEK EWYFFTPRDR KYPNGSRPKR AAGSGYWKAT GADKPINAKG GKKRVVAKRT 60 SVFDDPTVQI QELTAVIKQD ITALNYAVTD LQILCNSQNE SGNTSKHTTE HSTTVVDNLK 120 TRLMSTTKEF KEVLTMRTEM EKLEEQFDEV YVEAIKSRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-24 | 1 | 63 | 62 | 122 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-24 | 1 | 63 | 62 | 122 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-24 | 1 | 63 | 62 | 122 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-24 | 1 | 63 | 62 | 122 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
3swm_B | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
3swm_C | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
3swm_D | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
3swp_A | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
3swp_B | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
3swp_C | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
3swp_D | 2e-24 | 1 | 63 | 65 | 125 | NAC domain-containing protein 19 |
4dul_A | 2e-24 | 1 | 63 | 62 | 122 | NAC domain-containing protein 19 |
4dul_B | 2e-24 | 1 | 63 | 62 | 122 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915024.1 | 8e-44 | syntaxin-32 | ||||
Swissprot | Q9LK09 | 7e-31 | SYP32_ARATH; Syntaxin-32 | ||||
TrEMBL | A0A0D6QXR7 | 1e-43 | A0A0D6QXR7_ARACU; Uncharacterized protein | ||||
STRING | Pavir.J13548.1.p | 1e-43 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-26 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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