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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00007590-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | G2-like | ||||||||
| Protein Properties | Length: 302aa MW: 33842.8 Da PI: 7.2481 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 102.5 | 2.6e-32 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtp+LH++Fv ave LGG +kAtPk +l++m+vkgLt++hvkSHLQ+YR+
PSME_00007590-RA 19 PRLRWTPNLHQCFVTAVEGLGGRDKATPKLVLQMMNVKGLTISHVKSHLQMYRT 72
8****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 6.9E-31 | 15 | 72 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 9.475 | 15 | 75 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 6.09E-15 | 17 | 73 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.8E-23 | 19 | 73 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.2E-8 | 20 | 71 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 302 aa Download sequence Send to blast |
METCERNGLV RQYLRSKVPR LRWTPNLHQC FVTAVEGLGG RDKATPKLVL QMMNVKGLTI 60 SHVKSHLQMY RTGKNNQSNH ESQIQKCQKQ SITDSQKQRL TDDDGAEHLY SDFSKTSTCS 120 SVYSFGTTPA TRLLSGEMDS FIMASDRSTL DYANSIEQHP TCSDSIQAGS HGLTMEEASA 180 ATDNCNKGNS DCRSQTSLKG NEVEHLVHFL LLRHEQSKAM NEVQETLRFP SELQLTGRLC 240 QGNGKSENEN LYNETVDITN LSLSISTAYN KMKASCPRER GLLSSKYNSF QDQNDIKLDL 300 TI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 3e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 3e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 3e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 3e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 3e-19 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G02060.1 | 7e-32 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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