PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007589-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 359aa    MW: 40134.7 Da    PI: 8.0837
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007589-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.4e-331972255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      prlrWtp LH++Fv+ave+LGG +kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  PSME_00007589-RA 19 PRLRWTPHLHQCFVNAVERLGGRDKATPKLVLQLMNVKGLTISHVKSHLQMYRT 72
                      8****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-321574IPR009057Homeodomain-like
PROSITE profilePS5129410.2821575IPR017930Myb domain
SuperFamilySSF466891.29E-151775IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-241972IPR006447Myb domain, plants
PfamPF002493.1E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGSCERNGRV RQYIRSKVPR LRWTPHLHQC FVNAVERLGG RDKATPKLVL QLMNVKGLTI  60
SHVKSHLQMY RTARNNEGGN SESDPKGLQL DQIQNCQMQS IADSQKQSST DDDHGADNLD  120
SEFSKTSTGS FTISGHKRSL KRLWTGEMAS SNMASERITQ DRADSIERYP SYRVSTQAGT  180
HGNWAPLSEN LTDSLVLLRD QYATSATSGA RYSMTDQDGW REKHSYFPFS AHVSEESSAT  240
YTSNKGSSNC RQTSLKGNEV EHLVRLLLLK HEQSQAMDKV MEPLRVPSEL QLIERLCPGN  300
GKSENEKPGY ETVDSTNLSL GISSACNELK TSCPRETGLL SSKYNGFQDQ NHLKLDLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1023680.0BT102368.1 Picea glauca clone GQ0183_D11 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.13e-31G2-like family protein