PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00007561-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 129aa MW: 14709.9 Da PI: 7.7337 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 106.5 | 2.2e-33 | 5 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aC aCk+lrrkC++d ++apyf a+q +++f +hk+FG sn +k+l +++ ++r+da+ s++y+A+ar+++P++G+++ ++lq q+++lk PSME_00007561-RA 5 ACGACKFLRRKCENDYIFAPYFTADQigMEQFSKIHKVFGCSNFCKMLMRVDVDKRHDAVGSILYQANARIQNPIHGCLSKCFALQDQIDNLK 97 7***********************99767**************************************************************** PP DUF260 92 aelallke 99 ++l+ + + PSME_00007561-RA 98 EQLKIAYA 105 **998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.921 | 4 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-32 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MAGQACGACK FLRRKCENDY IFAPYFTADQ IGMEQFSKIH KVFGCSNFCK MLMRVDVDKR 60 HDAVGSILYQ ANARIQNPIH GCLSKCFALQ DQIDNLKEQL KIAYAELELL EREEPSFQRF 120 GGPFFGGQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-29 | 2 | 107 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-29 | 2 | 107 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SRV3 | 3e-32 | LBD20_ARATH; LOB domain-containing protein 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 8e-34 | LOB domain-containing protein 20 |