PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00007487-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 129aa MW: 14294.3 Da PI: 4.6617 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 30.4 | 1.1e-09 | 35 | 82 | 4 | 51 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpe 51 Ck+ +r+C ++C++ ++++ +kf ++h++FGa nv+kl++ +e PSME_00007487-RA 35 QCKMEERECLDNCTMLYRLASDYLHKFSILHQVFGACNVIKLIQVERE 82 6*****************************************997554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 7.3E-8 | 35 | 80 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEEHEREEVP VMQLTSNVTE NPRAQSLSGG AFHEQCKMEE RECLDNCTML YRLASDYLHK 60 FSILHQVFGA CNVIKLIQVE RERLRGPGRV ARAVVGGVVG ICAPTGGDFG GDVDAISLDK 120 IEQCLDDMI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087617 | 2e-36 | EF087617.1 Picea sitchensis clone WS02730_N15 unknown mRNA. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-08 | LBD family protein |