PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00007348-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 166aa MW: 18585.5 Da PI: 10.763 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17 | 1e-05 | 53 | 75 | 34 | 56 |
HHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 34 AkklgLterqVkvWFqNrRakek 56 A k+ ++ +q+ +WFqNrR ++ PSME_00007348-RA 53 AGKVTVQWKQIWNWFQNRRHAQR 75 455688899**********8777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-7 | 31 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 47 | 81 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MGRPPLGGAP SFRFLPMEIA DMEMALEESR GANPPRDAVI YLAEKFSAAR EHAGKVTVQW 60 KQIWNWFQNR RHAQRSKSAK MAVKLNSIPS SSDDSLAKRA ATNSFASLSG YLVMESNLAQ 120 RRLKLSPLPD KLGDLLRPPI SDIPSTFLLL FVLRSSSNFG AMYWIF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115155 | 1e-149 | BT115155.1 Picea glauca clone GQ03610_G04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012074200.1 | 3e-29 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Swissprot | Q8RWJ7 | 2e-21 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | D5ACD8 | 8e-38 | D5ACD8_PICSI; Uncharacterized protein | ||||
STRING | XP_010275166.1 | 2e-28 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 8e-24 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |