PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00007174-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | GATA | ||||||||
Protein Properties | Length: 402aa MW: 44899.1 Da PI: 9.8982 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.6 | 1.7e-18 | 189 | 223 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+t TplWR++pdg+k+LCnaCG++++k g+ PSME_00007174-RA 189 CAECKTNRTPLWRNDPDGPKSLCNACGIRFKKIGK 223 ********************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.9E-16 | 183 | 235 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.244 | 183 | 219 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-13 | 183 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.1E-16 | 187 | 224 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.65E-11 | 188 | 222 | No hit | No description |
Pfam | PF00320 | 2.4E-16 | 189 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 189 | 214 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MLPGALCARQ MYGHNHYKKF WLKKMEETED EQTQDSWRTL QPEGFGSRIF WHSSESFRPS 60 LEIKDRIKST IRVSSVRSGA GSKNCERNLA ASEKDLPDGS EIHRALSIDM QMHMPYDADP 120 RNKPRKSVNI FPMQEEGHEE RKLQENGKKS SAKESLQSLR RFLHIGENRL VKIGATDVEF 180 PDAAVARTCA ECKTNRTPLW RNDPDGPKSL CNACGIRFKK IGKREQQKAG SRLPSVSSVK 240 QMTSKRKQQD SDEYAPLPQD ATIAAASHPL RKKSTATVTT APTVQHSYLK NQITSSGCCC 300 DSILRPVAAS AIRFASKNGM GKTGLDYFCG LALKEKMNKN GGQGCGHMSE GRKSGGLGVR 360 AAKRMVSDRS FLMSSTLVAK EEEEEKVVEL CRLITEWGQQ KQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102848 | 0.0 | BT102848.1 Picea glauca clone GQ0201_J20 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-16 | GATA transcription factor 20 |