PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007174-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 402aa    MW: 44899.1 Da    PI: 9.8982
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007174-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18189223135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C+t  TplWR++pdg+k+LCnaCG++++k g+
  PSME_00007174-RA 189 CAECKTNRTPLWRNDPDGPKSLCNACGIRFKKIGK 223
                       ********************************886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-16183235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.244183219IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-13183231No hitNo description
Gene3DG3DSA:3.30.50.104.1E-16187224IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.65E-11188222No hitNo description
PfamPF003202.4E-16189223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLPGALCARQ MYGHNHYKKF WLKKMEETED EQTQDSWRTL QPEGFGSRIF WHSSESFRPS  60
LEIKDRIKST IRVSSVRSGA GSKNCERNLA ASEKDLPDGS EIHRALSIDM QMHMPYDADP  120
RNKPRKSVNI FPMQEEGHEE RKLQENGKKS SAKESLQSLR RFLHIGENRL VKIGATDVEF  180
PDAAVARTCA ECKTNRTPLW RNDPDGPKSL CNACGIRFKK IGKREQQKAG SRLPSVSSVK  240
QMTSKRKQQD SDEYAPLPQD ATIAAASHPL RKKSTATVTT APTVQHSYLK NQITSSGCCC  300
DSILRPVAAS AIRFASKNGM GKTGLDYFCG LALKEKMNKN GGQGCGHMSE GRKSGGLGVR  360
AAKRMVSDRS FLMSSTLVAK EEEEEKVVEL CRLITEWGQQ KQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1028480.0BT102848.1 Picea glauca clone GQ0201_J20 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-16GATA transcription factor 20