PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00007149-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 166aa MW: 18808.7 Da PI: 9.8409 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.3 | 3.4e-41 | 28 | 144 | 2 | 118 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptde+lvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewy F++rd+ky++g+r++ra+ sgyWkatg d+++ + PSME_00007149-RA 28 PPGFRFFPTDEDLVVHYLCKKATSQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYLFTPRDRKYPNGSRPKRAAGSGYWKATGADNPINA 119 9****************************.88***************8777899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgek 118 k +++ vg+kk Lvfy g+apk+++ PSME_00007149-RA 120 KgGKKRVGIKKALVFYAGKAPKAQR 144 966777***************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.15E-45 | 21 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.454 | 27 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-18 | 28 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MGTSLGDFHE EQPWILKNMD CHEHNQWPPG FRFFPTDEDL VVHYLCKKAT SQIIPVPIIA 60 EVDLYKYDPW QLPDKALFGE KEWYLFTPRD RKYPNGSRPK RAAGSGYWKA TGADNPINAK 120 GGKKRVGIKK ALVFYAGKAP KAQRQIGSCM NTVLLMLAGL QGRKEA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-59 | 15 | 141 | 3 | 127 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026426066.1 | 8e-64 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 2e-61 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D6R3P9 | 1e-69 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_010257746.1 | 7e-63 | (Nelumbo nucifera) | ||||
STRING | GSMUA_Achr10P29200_001 | 7e-63 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-62 | NAC family protein |