PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007148-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 694aa    MW: 71735.6 Da    PI: 9.1859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007148-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05121143123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  PSME_00007148-RA 121 FVCEICNKGFQRDQNLQLHRRGH 143
                       89*******************88 PP
2zf-C2H212.20.00054197219123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H +t+
  PSME_00007148-RA 197 WKCDKCSKRYAVQSDWKAHSKTC 219
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.72E-7120143No hitNo description
Gene3DG3DSA:3.30.160.602.4E-5120143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949121143IPR007087Zinc finger, C2H2
SMARTSM003550.017121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM00355220162192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-4185218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.72E-7192217No hitNo description
SMARTSM00355140197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MLNGGLPAAA ASSQAVGSPG SGSGSRANWN PVVKLENSTT TMTQSNVTSA ASGEGATVSS  60
AAATGGGGGG AVQQSSTPLN NSSVQQQPGV TKRKRNLPGM PDPDAEVIAL SPKTLMATNR  120
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSKEIRKR VYICPEPSCV HHDPSRALGD  180
LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT  240
HRAFCDALAE ESARATMNNT EPVVTRTTTN SSSDDGLNPP DSQKISISST VGAVAPPPHP  300
GGWGGQTPGG GGGGRGGSGP GLSLWLGSGP GGPGPPPTID SASASSSTQF NAMDGTGTYP  360
AYPFLMRQSN NPSERAAAAA AAAELGRPGG GGGGFMAAGS HSNLFASLLA SGNLQAAQNP  420
TGFSELIGAM TRGGNGSTST STSSATTAAP SVFSTGNPAI FSHPQPPPVH QQQHHHHNQH  480
NNTATAQMSA TALLQKAAQM GATAASNNPS LLRGLGGLAG HDNSWPPMMA ATNHSSEPYP  540
LPRRCPEGFM PMPMPVPVPM SSSSSADQMA MQELMNSAGL GNLTGLLLQS PFLPPHMSNG  600
NGNGSTGDQT GACSIIKAEE LGTSMKPTTL DFLGLGGSHG RTLSHTDYAM ITSMSTTGAT  660
GNEVAVPSSY TSHNSGENNK KQHSSSSAKS WDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34193256366Zinc finger protein JACKDAW
5b3h_F3e-34193256366Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6775740.0EF677574.1 Picea sitchensis clone WS02771_B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.11e-133protein indeterminate-domain 1-like isoform X1
RefseqXP_024365607.11e-134protein indeterminate-domain 7-like isoform X2
TrEMBLB8LP080.0B8LP08_PICSI; Uncharacterized protein
STRINGPP1S165_3V6.11e-132(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-116indeterminate(ID)-domain 2