PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00007117-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 165aa MW: 19124.7 Da PI: 5.6672 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.5 | 1.7e-41 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaC++lrr+C+++C +apyfp ++p+kfa vh++FGasn+ kll+++p ++r+da++s+vyeA+ar+rdPvyG+vg++ lq+q+ +l+++ PSME_00007117-RA 8 PCAACRLLRRRCSEECNFAPYFPRDDPQKFASVHRIFGASNINKLLQDIPIDQRSDAVNSMVYEAHARIRDPVYGCVGTVCWLQKQMLNLQSQ 100 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e PSME_00007117-RA 101 LASAQAE 107 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.558 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-41 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MTEVIMFPCA ACRLLRRRCS EECNFAPYFP RDDPQKFASV HRIFGASNIN KLLQDIPIDQ 60 RSDAVNSMVY EAHARIRDPV YGCVGTVCWL QKQMLNLQSQ LASAQAEITR LRIMQQNTNY 120 YYDDFITDLT VHRIMKNPNS PDEYYGQQLS SSMFLDAQES FNSMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-43 | 8 | 110 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-43 | 8 | 110 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022724417.1 | 3e-54 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 1e-49 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2P5CCR0 | 7e-53 | A0A2P5CCR0_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | Gorai.011G051200.1 | 2e-53 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-42 | LBD family protein |
Publications ? help Back to Top | |||
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