PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00007094-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 215aa MW: 24156.3 Da PI: 7.1794 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 153 | 5.5e-48 | 76 | 169 | 8 | 101 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 + i++atdf+nh+lPlarikki+k+de+vkmisaeaP++++kace+fi eltlr+w ++ee+krrtl+k+diaaa+trtdifdfl+di prd+ PSME_00007094-RA 76 QGIDQATDFRNHSLPLARIKKIMKSDENVKMISAEAPMVFAKACEMFINELTLRAWSQTEETKRRTLQKNDIAAAITRTDIFDFLIDILPRDD 168 3489****************************************************************************************8 PP NF-YC 101 l 101 l PSME_00007094-RA 169 L 169 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.38E-32 | 44 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-22 | 88 | 151 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.2E-36 | 89 | 166 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MDQQSSMRRM PVKYHGATPY QTAQVLPPIA HGTFQQPPTF SFAHAPSLSL SAHHNQLPYQ 60 QQQQDEVQIS LANQMQGIDQ ATDFRNHSLP LARIKKIMKS DENVKMISAE APMVFAKACE 120 MFINELTLRA WSQTEETKRR TLQKNDIAAA ITRTDIFDFL IDILPRDDLK EDQHSAPHGM 180 IVGNPVAYMQ NMLQAGHKHT DQSSSHNSGH NVAGS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-51 | 74 | 166 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 138 | 144 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF084647 | 2e-83 | EF084647.1 Picea sitchensis clone WS02719_H11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026423019.1 | 2e-59 | nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_026423020.1 | 2e-59 | nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8LCG7 | 4e-58 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A9NTJ8 | 5e-74 | A9NTJ8_PICSI; Uncharacterized protein | ||||
STRING | Cagra.1310s0011.1.p | 6e-58 | (Capsella grandiflora) | ||||
STRING | cassava4.1_014053m | 2e-57 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-60 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
---|---|---|---|
|