PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007067-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CPP
Protein Properties Length: 772aa    MW: 82927 Da    PI: 8.4859
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007067-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.7e-16303341341
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk e
  PSME_00007067-RA 303 CKRCNCKKSKCLKLYCECFAAGVYCVEPCTCQECFNKPE 341
                       79**********************************976 PP
2TCR50.34.6e-16387425139
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++k+gCnCkks ClkkYCeC++ag+ Cs+ C+Ce+CkN 
  PSME_00007067-RA 387 RHKRGCNCKKSMCLKKYCECYQAGVGCSDGCRCESCKNV 425
                       589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.2E-16301342IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.511302427IPR005172CRC domain
PfamPF036381.2E-11304339IPR005172CRC domain
SMARTSM011141.5E-16387428IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.1E-12389424IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MQPGNQSQRG IRRRCLDFEA SEAQRKTMSN SSWKSRSQMP KTGALVNSTH DSETNTSPSV  60
SCEKGVTSDC KQIVPLKRET GVDSGRNSQS SSNVRFSTFL SKTNELTSDK SDSNVRNNGN  120
TPISVGIPSG IGLHLNSLAT AMPLNCGVNM LTSAKGSAST QGMSPSSGVK EASSELVGSS  180
LPVVNSGGNI PVGSNSNIAS GMVVSMVEKT RIDHQELQSS GMSQIGVTRS TTCFRSVTVG  240
IKPLQSRLPF KSEERNLSPL GKKRPALLDI SQQSPFSTGE EFSQSSPKKK RRKSTTIGDK  300
DGCKRCNCKK SKCLKLYCEC FAAGVYCVEP CTCQECFNKP EYEDMVLGTR QQIESRNPLA  360
FAPKIVRGAD SPPTNGDECG ETPSSARHKR GCNCKKSMCL KKYCECYQAG VGCSDGCRCE  420
SCKNVYGKKE GGSDDIEDNE VPIEGWDKDS LEEKAEVHDV GNDILLSEQQ HANDLSPLTP  480
SFQYSGQGKS SAKLNSCGKK HFASEDLESP TVSQSCAKPP RSPGKILRPT KGIQGNITAI  540
HNRQAGSRTS ASPMFTPKMD KSGKFSPQWD CLADICTLTP MLHPPMRPSA SSASNVDGID  600
VSPFSGQQNE ISSMSSRPLA SRHSCHVGTS IGFRQPAARS PICTSENIHW QTPVNAKVTP  660
VTPALSTTAC TAGNKLSDGS DFDMQSHDVS DSLEDDTPDI LKNNGSPTRG LKASSPNQKR  720
VSPPHNYCPK ELMNMRPISS TPGIRSGRKY ILQSVPSFPP LTPLSGEGQA NE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1830642514121Protein lin-54 homolog
5fd3_B6e-1830642514121Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287291KKKRR
2287292KKKRRK
3288292KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1238131e-134BT123813.1 Picea sitchensis clone WS04717_J09 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-69TESMIN/TSO1-like CXC 2