PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006896-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 304aa    MW: 34784.1 Da    PI: 6.1858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006896-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.7e-131966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed++l +++k++G g W++ a++  ++R +k+c++r ++yl
  PSME_00006896-RA 19 RGAWTASEDKILSEYIKKHGDGGWRSLANRASLKRRGKSCRLRCLNYL 66
                      89******************************99************97 PP
2Myb_DNA-binding43.47.6e-1472117148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + eEdell+ ++++lG++ W++ a +++ gRt++++k++w+++l
  PSME_00006896-RA  72 RGNISIEEDELLIILHHLLGNR-WSLTAGRLP-GRTDNEIKNYWNTWL 117
                       678889****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3031466IPR017930Myb domain
SuperFamilySSF466894.21E-2517113IPR009057Homeodomain-like
SMARTSM007171.9E-101868IPR001005SANT/Myb domain
PfamPF002493.9E-121966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-182073IPR009057Homeodomain-like
CDDcd001675.74E-72166No hitNo description
PROSITE profilePS5129422.52667121IPR017930Myb domain
SMARTSM007175.9E-1171119IPR001005SANT/Myb domain
PfamPF002493.5E-1272117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2174120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
SIMGRSPSSS THEDQTLNRG AWTASEDKIL SEYIKKHGDG GWRSLANRAS LKRRGKSCRL  60
RCLNYLRPEI KRGNISIEED ELLIILHHLL GNRWSLTAGR LPGRTDNEIK NYWNTWLSKT  120
VRMGEFEPKF QKINKRSSDI PSSSEKEGVD KEKYNAQTLP SKTKAVRYSK RTVADIFKYD  180
THDGIDREEC LKVADNEGLK VADNDDEEID TSKSWSQLLV EDCMEDYQSI IVQESSSSSY  240
CNLINEEFPH SKDFNCSYFD SFLDLGELSI LLPYMCCGWE IDVHKAKQVG ISGMGECKLV  300
KEFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-221712125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056LKRRGKS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416075.12e-56myb-related protein 308
RefseqXP_021800592.12e-56transcription factor TT2-like
SwissprotQ9S9K91e-48MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2H4Z0B01e-123A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
STRINGEMJ184617e-56(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-45myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]