PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00006894-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25769.7 Da PI: 5.5773 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.1e-08 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w ++l PSME_00006894-RA 3 RWALIAGRLP-GRTDNEIKNYWITHL 27 5*********.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.019 | 1 | 31 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-12 | 3 | 27 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-6 | 3 | 27 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.51E-6 | 3 | 27 | No hit | No description |
SuperFamily | SSF46689 | 1.3E-7 | 3 | 37 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MCRWALIAGR LPGRTDNEIK NYWITHLSKK VQLGEFDPSS QRNFKRRNSP SYSDYKGEKF 60 VDKDDYKGRN AQAVETIAAR LCGRVTVDVQ NQDSYSSDVL DILVGTNQGE KMEFKAADNH 120 VAQTDISKSW CQLLLEDCMG DYQYDQLELI NGLQTDRSHD HLLESSFLSP CRSKLFQEIH 180 YSTSCNLVDN AFPHSEHFNS TCLESLMELG EFCSLLPEAT AGHKNR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A167V8X0 | 9e-58 | A0A167V8X0_PICAB; Transcription factor MYB29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 5e-13 | myb domain protein 5 |