PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006821-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LSD
Protein Properties Length: 285aa    MW: 31990.7 Da    PI: 8.7879
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006821-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.21.5e-09227251125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       C +C t+L+YP GApsV+ alC++V
  PSME_00006821-RA 227 CRNCFTTLMYPCGAPSVKYALCHFV 251
                       99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF514453.68E-18120172IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.2E-19122172IPR013781Glycoside hydrolase, catalytic domain
PfamPF002324.1E-17123171IPR001360Glycoside hydrolase family 1
TIGRFAMsTIGR010532.3E-8186214IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-4189213IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.2E-7224254IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-8227251IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMLWQGRICQ LWRVGNPSGE RARPIKVTMS STHDKQILPS KKQLLRGSHF FLEEDLTIRQ  60
QEERREDMSK VREARDEGKR AWLYKGKTII AFFGRPKTKQ QGSNQERSAN SLAEKYETKT  120
VWENRGSTLD GVNGDVAVDQ YHRYKEDIDI MSAMGVDAYR FSISWPRLIP VCNIVTAVPP  180
GAEMAQLICG CCRTLLMYAH VETSVQCSCC STVNFAMEAN QVAHVNCRNC FTTLMYPCGA  240
PSVKYALCHF VTNVGQISNM RMPLPAQRSP VAATTALASS SAHPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yhs_A9e-141261734087Pyruvylated beta-D-galactosidase
5yhs_B9e-141261734087Pyruvylated beta-D-galactosidase
5yif_A1e-131261734087Pyruvylated beta-D-galactosidase
5yif_B1e-131261734087Pyruvylated beta-D-galactosidase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0717601e-94BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA.
GenBankEF0847061e-94EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-34lsd one like 1