PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00006400-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 1253aa MW: 138515 Da PI: 9.1619

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00006400-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	54	89	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ + +++a +++G++ Wk++++++ +Rt +++ PSME_00006400-RA 54 QWSKEDLQNFYEAYRKYGKD-WKKVSAMIC-NRTMEMV 89 6***************99.*****.*8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-10	49	99	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.206	50	101	IPR017884	SANT domain
SMART	SM00717	5.4E-5	51	99	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-4	53	93	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-7	54	89	IPR001005	SANT/Myb domain
CDD	cd00167	4.15E-6	55	89	No hit	No description
SMART	SM01135	9.5E-57	690	791	IPR033471	DIRP domain
Pfam	PF06584	1.1E-32	690	790	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1253 aa Download sequence Send to blast
GGLINITKMA SSRKPRIASR RTGKATEGAA EKDDDGTYKN RQRKRKLSDM LGPQWSKEDL 60 QNFYEAYRKY GKDWKKVSAM ICNRTMEMVE ALYSMNKAYL SLPDGAASAA GLIAMMIDHY 120 NILEGSNSDR DSSDGFGASG LPQKQTRFKK KFTSTNNFDR SYSDLLQCRS GPSNYGCPSP 180 VKKRRSGGSR PRAVGKRTPR FPVSYALEKQ NSEAVLSGKQ GLVSDDDHDD YDVAKAVALT 240 LAEASQRAAS PQVSRTPSRI TSQMRLSPVQ NGDLKGSYAR NESGGSAIKL TGSTMDEGSP 300 EGSQESKEVG NGGITKTDEQ IIPGETRMKA AHNLKSRVRK PPLKKFKTHG LKQECIDDVK 360 EEFSCTEEGV GVKDEKDELM DTEADYGRKR KKPLPQRSRK RSRQLFSGDE NFGLDALATL 420 ADLSLNGLLP SPTVESESSA QVKEEKDNTI LEKGDRNARQ VRVLDLHEEK PRISSNRERG 480 SLYKASVNSV ELVTKEKHHE DGKTIVLEGG HVSPVADIKK RRRKPTAPKV QQLEALGETC 540 SGEIQKLEAS IGDGAKFRNK PKKASNTHTI SKQGRLAKTL PMSAEDPEFT GSGGPVSDPG 600 IQNSTASQVS LPTKLRSRRK MALEKVLASK PVECPEKCEN IVCNEQSERQ NNVTVFCPHT 660 VTDRASSLKA KFIHCLSSAK LRRWCTYEWF YSAIDWPWFT RNEFVEYLNH AGLGHVPRLT 720 RVEWGVIRSS LGKPRRLSKR FLQEEREKLE QYRESVRKHY NEVRAGICDG LPTDLARPLS 780 VGQRVIACHP KSREVHDGNI LTVDRNRCRV QFDRPELGVE FVLDIDCMPL NPLENMPEAL 840 RRKSMVLDGL GQTFDDSQLE MKSRGLGVGV SPKTIQNDRV DKSAADSSFG PPSKYSFNTL 900 LKQAKGDTVD SVIQAKAAAN EVVVATQQAL YNQPCTLAQI QAKEADIRAL ADLTRALDKK 960 EAILVELRNM NDEVDGHKKN AEAMRNSENF RKQYATVVHQ LKDTNEQVTS ALVYLRQRNT 1020 YQENSIPPWH RVIPLPVAVG GSSSMDPSAP ITSETCPQIG EIINNSGRKA RMLIDAAIQA 1080 MSSLKEGDDK LAMIGGSLDP MTYVHAGVDS GNMGVKSGHQ FDSSRCADQE TLSLCENSTA 1140 SLGSELIADN ATDVQQKGTL YRKEAPVLSE LIASCVAALF TIQTCTERQY PPSDVAQMLD 1200 NAVTSLQPYS SQNLIIYREI QQSMGVIKNQ ILALIPAHTS ISVSTEIPAV PRK

Sequence ? help Back to Top

Protein Sequence Length: 1253 aa Download sequence Send to blast

GGLINITKMA SSRKPRIASR RTGKATEGAA EKDDDGTYKN RQRKRKLSDM LGPQWSKEDL  60
QNFYEAYRKY GKDWKKVSAM ICNRTMEMVE ALYSMNKAYL SLPDGAASAA GLIAMMIDHY  120
NILEGSNSDR DSSDGFGASG LPQKQTRFKK KFTSTNNFDR SYSDLLQCRS GPSNYGCPSP  180
VKKRRSGGSR PRAVGKRTPR FPVSYALEKQ NSEAVLSGKQ GLVSDDDHDD YDVAKAVALT  240
LAEASQRAAS PQVSRTPSRI TSQMRLSPVQ NGDLKGSYAR NESGGSAIKL TGSTMDEGSP  300
EGSQESKEVG NGGITKTDEQ IIPGETRMKA AHNLKSRVRK PPLKKFKTHG LKQECIDDVK  360
EEFSCTEEGV GVKDEKDELM DTEADYGRKR KKPLPQRSRK RSRQLFSGDE NFGLDALATL  420
ADLSLNGLLP SPTVESESSA QVKEEKDNTI LEKGDRNARQ VRVLDLHEEK PRISSNRERG  480
SLYKASVNSV ELVTKEKHHE DGKTIVLEGG HVSPVADIKK RRRKPTAPKV QQLEALGETC  540
SGEIQKLEAS IGDGAKFRNK PKKASNTHTI SKQGRLAKTL PMSAEDPEFT GSGGPVSDPG  600
IQNSTASQVS LPTKLRSRRK MALEKVLASK PVECPEKCEN IVCNEQSERQ NNVTVFCPHT  660
VTDRASSLKA KFIHCLSSAK LRRWCTYEWF YSAIDWPWFT RNEFVEYLNH AGLGHVPRLT  720
RVEWGVIRSS LGKPRRLSKR FLQEEREKLE QYRESVRKHY NEVRAGICDG LPTDLARPLS  780
VGQRVIACHP KSREVHDGNI LTVDRNRCRV QFDRPELGVE FVLDIDCMPL NPLENMPEAL  840
RRKSMVLDGL GQTFDDSQLE MKSRGLGVGV SPKTIQNDRV DKSAADSSFG PPSKYSFNTL  900
LKQAKGDTVD SVIQAKAAAN EVVVATQQAL YNQPCTLAQI QAKEADIRAL ADLTRALDKK  960
EAILVELRNM NDEVDGHKKN AEAMRNSENF RKQYATVVHQ LKDTNEQVTS ALVYLRQRNT  1020
YQENSIPPWH RVIPLPVAVG GSSSMDPSAP ITSETCPQIG EIINNSGRKA RMLIDAAIQA  1080
MSSLKEGDDK LAMIGGSLDP MTYVHAGVDS GNMGVKSGHQ FDSSRCADQE TLSLCENSTA  1140
SLGSELIADN ATDVQQKGTL YRKEAPVLSE LIASCVAALF TIQTCTERQY PPSDVAQMLD  1200
NAVTSLQPYS SQNLIIYREI QQSMGVIKNQ ILALIPAHTS ISVSTEIPAV PRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	391	RKRKK
2	518	523	KKRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF676459	0.0	EF676459.1 Picea sitchensis clone WS02738_G12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806734.1	0.0	protein ALWAYS EARLY 2-like isoform X2
TrEMBL	A0A2H3Z191	0.0	A0A2H3Z191_PHODC; protein ALWAYS EARLY 2-like isoform X2
STRING	XP_008806732.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding