PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006388-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 514aa    MW: 56945.6 Da    PI: 4.6847
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006388-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.7e-35521432102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++++++ws  +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll
  PSME_00006388-RA  52 FLTKTYDMVDDSSTDSIVTWSPGNNSFIVCNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEDFLRGQRNLL 135
                       9*********************99*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  PSME_00006388-RA 136 KNIHRRKP 143
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-3943136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3547141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-6448141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-205275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-20103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
DPLTHGIESP PPLVGLLVYP LSAPDLCRAL EELPNDGMDG SQSSGGNAVP PFLTKTYDMV  60
DDSSTDSIVT WSPGNNSFIV CNPPEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVDPDQW  120
EFANEDFLRG QRNLLKNIHR RKPMHSHSQN PQGQGACNDA MKYELEEEIQ RLKRDKSLLM  180
MELVRIRQQH QGTEMHMQTL EERLQAMEHR QQQMMAFLAK AMQKPGFVAQ LVQQSENNKL  240
LEAANKKRRL PKQENCSDAG ETELTDSQIV KYQPASGDEG SAVPMKVLNT DPFNRMESSL  300
NSLETFFQDV GQACGEVMDT GSSSRACLTE MHGTCFPDVC ISPGLSDIQG SCALSELHSS  360
SHASPQLAES ITCEIPCQMS LGLSLSQCET SKGVETLNQS GKDEREAYMG SKTSGIDVNS  420
EPVAMEVGDN ERAVGKVTAS GKVTSGVNDL FWEQFLTETP GSATDTQEAE SKIQESRTKD  480
QDERLPENGK CWSNKQTLDQ LTEQMGHLAS GTQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-293714111129Heat shock factor protein 1
5d5v_B7e-293714111129Heat shock factor protein 1
5d5v_D7e-293714111129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1045740.0BT104574.1 Picea glauca clone GQ02812_A09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916598.11e-145heat stress transcription factor A-4b
TrEMBLA0A3S3NBU91e-150A0A3S3NBU9_9MAGN; Heat shock factor HSF-type
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.23e-98heat shock factor 3