PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006100-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 270aa    MW: 29494 Da    PI: 8.3231
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006100-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-3110111197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l++ +     p++q++++ +v+k+FG++ ++ +++a++e+er+++++sl+yeA+ r+ +Pv+Gavg+++++++q++
  PSME_00006100-RA  10 SCNGCRVLRKGCSDNCILRQSIqwienPQSQAHATVFVAKFFGRAGLMTFIAAVSESERPALFKSLLYEACGRTVNPVHGAVGLLWTGKWQIC 102
                       6******************************************************************************************** PP

            DUF260  89 qlkaelall 97 
                       q++++++l 
  PSME_00006100-RA 103 QAAVQTVLS 111
                       ***998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.079115IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-2610109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQKEQQRKMS CNGCRVLRKG CSDNCILRQS IQWIENPQSQ AHATVFVAKF FGRAGLMTFI  60
AAVSESERPA LFKSLLYEAC GRTVNPVHGA VGLLWTGKWQ ICQAAVQTVL SGGSLDRTPP  120
SPWFTSTDAN GDRNGMPDGD KWQHQTDVEN YPGDDDDVCK IYELGACVDS RRVRQRIDGN  180
INNNNNGITS TDADKLGQRG AGIDGKNNDI KLDLSLNCPS KSKSSNLKQQ RVSSPSTNSV  240
NSEGSVNRLK SSSPQPSSTM AAEQKLLELL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2625192e-68JQ262519.1 Pinus radiata isolate 2166 hypothetical protein (2_2916_01) gene, 3' UTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QX501e-92A0A0D6QX50_ARACU; Uncharacterized protein
STRINGA0A087GWK95e-61(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-64LOB domain-containing protein 38