PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005961-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 266aa    MW: 30202.3 Da    PI: 8.1492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005961-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-151562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT++Ed+ l + +  +G g+W++++++ g++R++k+c+ rw +yl
  PSME_00005961-RA 15 RGPWTQDEDLCLTQFIGAHGEGCWSSVPKKTGLKRCGKSCRFRWVNYL 62
                      89********************************************97 PP
2Myb_DNA-binding50.25.8e-1668111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ +++E++l+++++k+lG++ W++Ia +++ gRt+k++k++w++
  PSME_00005961-RA  68 RGNISQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDKEVKNYWNT 111
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9371062IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-201065IPR009057Homeodomain-like
SuperFamilySSF466891.46E-2613109IPR009057Homeodomain-like
SMARTSM007172.8E-121464IPR001005SANT/Myb domain
PfamPF002491.1E-131562IPR001005SANT/Myb domain
CDDcd001671.12E-81762No hitNo description
PROSITE profilePS5129423.64563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2366116IPR009057Homeodomain-like
SMARTSM007172.8E-1567115IPR001005SANT/Myb domain
PfamPF002492.6E-1468111IPR001005SANT/Myb domain
CDDcd001675.06E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRKPCYDSK DGLNRGPWTQ DEDLCLTQFI GAHGEGCWSS VPKKTGLKRC GKSCRFRWVN  60
YLRPSVKRGN ISQDEEDLII RLHKLLGNRW SLIAGRIPGR TDKEVKNYWN TRLNKKGHAR  120
GCIRLKSIKP KKPNISEPAV SLVTPTSANQ EGEKEKVICC PVIEDLKNGP TSSNYPMKQE  180
ASSSSDPGKL AAVSAEMDLW NSLQLNLNSI PSWTCSNFLH DDFKSDFFPE PFGYTQENVR  240
PLCCMFDTEN VCEDYVEIFN PFQEPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251311625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP813939e-53MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A061EEZ84e-58A0A061EEZ8_THECC; Myb domain protein 4, putative
STRINGEOY008546e-59(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-53myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]