PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00005901-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 188aa MW: 22296.8 Da PI: 9.6289 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.4e-12 | 74 | 160 | 11 | 99 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++g +++ f++++ +g+ +++ t++d +g sW+++ yr++++r v+t+GW eF+++ + k gD+++ + +++ f +v++f + PSME_00005901-RA 74 GRNGKMYFQVIFMTKYlSGS--QGIVATFKDCDGFSWRIEWyAYRQSGQRLVFTTGWYEFASDRNAKYGDILLVEILNSKHF--KVQIFPR 160 67889999999*****7555..7899**************9456999999*************************7776777..9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-14 | 59 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-14 | 60 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.137 | 64 | 161 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.6E-5 | 64 | 161 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-11 | 74 | 160 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.80E-11 | 85 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEIRAQVIWT RESWLFVDNE TSMMGTKVNF KNRYKPHVGE GLLSPNREMV TYFVKYIFTE 60 HSSFARKIQR KCLGRNGKMY FQVIFMTKYL SGSQGIVATF KDCDGFSWRI EWYAYRQSGQ 120 RLVFTTGWYE FASDRNAKYG DILLVEILNS KHFKVQIFPR EICMAIKENN ALGCTREVGF 180 LEFFHYML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-06 | B3 family protein |