PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00005790-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

CO-like

Protein Properties

Length: 419aa MW: 46817.2 Da PI: 4.8813

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00005790-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.2	1.3e-06	45	86	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 ++C+ +e+ ++ C++ +C +C + +H + H+ PSME_00005790-RA 45 VWVCEVCEQAPAAVTCKEEAAAFCVSCDTDIH-YanplassHE 86 689****************************9.4456666655 PP
2	CCT	59.2	1.4e-20	341	384	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a++lRY+eKrk+R+Fe++irY+sRKa+Ae+ pR+KGrF k++ PSME_00005790-RA 341 RKARVLRYREKRKSRRFERTIRYASRKAYAETQPRIKGRFSKRT 384 9***************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.4E-9	43	90	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.072	43	90	IPR000315	B-box-type zinc finger
CDD	cd00021	1.18E-4	46	76	No hit	No description
PROSITE profile	PS51017	15.914	341	383	IPR010402	CCT domain
Pfam	PF06203	1.3E-14	341	383	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MAKLCDVCQV SNSVLYCRAH PAQLFLVCDV KIHGGSKASL CHERVWVCEV CEQAPAAVTC 60 KEEAAAFCVS CDTDIHYANP LASSHERAHV IPFYECPIMP NNNTGTNAND DNLDCNVLLN 120 EDGGGDDPLK HDYVDDDYDY YDDDENDHNN LLNHQEDDNY AEICCAEEAA TASWFIPEAK 180 RNNLSIINGG NSEGEDKMVK DKLKFKAYMQ SNDFLQDVDN YVDLEYLGTT TTMITPTIPT 240 AHVGADSMVP VHTPEAIEHS STNVYIETAR PLDVEAASKC NYVYRTTSLN HCVSSSSMDV 300 GIVPDSKTTT NSSTPYHDPR GVFEIPHRVV HPGGQVELLG RKARVLRYRE KRKSRRFERT 360 IRYASRKAYA ETQPRIKGRF SKRTDAEVEQ IYSSSLLPDQ GYGVVPTSIL LIQSIEIIL

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MAKLCDVCQV SNSVLYCRAH PAQLFLVCDV KIHGGSKASL CHERVWVCEV CEQAPAAVTC  60
KEEAAAFCVS CDTDIHYANP LASSHERAHV IPFYECPIMP NNNTGTNAND DNLDCNVLLN  120
EDGGGDDPLK HDYVDDDYDY YDDDENDHNN LLNHQEDDNY AEICCAEEAA TASWFIPEAK  180
RNNLSIINGG NSEGEDKMVK DKLKFKAYMQ SNDFLQDVDN YVDLEYLGTT TTMITPTIPT  240
AHVGADSMVP VHTPEAIEHS STNVYIETAR PLDVEAASKC NYVYRTTSLN HCVSSSSMDV  300
GIVPDSKTTT NSSTPYHDPR GVFEIPHRVV HPGGQVELLG RKARVLRYRE KRKSRRFERT  360
IRYASRKAYA ETQPRIKGRF SKRTDAEVEQ IYSSSLLPDQ GYGVVPTSIL LIQSIEIIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113547	0.0	BT113547.1 Picea glauca clone GQ03412_N02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q1EL25	0.0	Q1EL25_PICAB; Constans-like 1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	7e-33	CONSTANS-like 4