PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00005773-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33647 Da PI: 8.9142 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.9e-11 | 2 | 39 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l ++v+ +G g W++I+ + g++R++k+c++rw +yl PSME_00005773-RA 2 ILSEYVRIHGDGEWSKIPPKAGLKRCGKSCRLRWTNYL 39 5789********************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.1e-16 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+ +++++lG++ W++Ia +++ gRt++++k++w++ PSME_00005773-RA 45 RGSISPDEEELIFRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 89 7888******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.521 | 1 | 39 | IPR017930 | Myb domain |
SMART | SM00717 | 0.36 | 1 | 41 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-17 | 2 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.21E-22 | 2 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.65E-6 | 2 | 39 | No hit | No description |
Pfam | PF00249 | 5.1E-9 | 3 | 39 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.264 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-15 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 45 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 47 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-11 | 49 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MILSEYVRIH GDGEWSKIPP KAGLKRCGKS CRLRWTNYLR PGIKRGSISP DEEELIFRLH 60 RLLGNRWSLI AGRLPGRTDN EIKNYWNTCL SKKLLLDESQ PKRMSRSPSP KRNHVLIKTT 120 PRRIITAVKH AGILNANDYS NRLSSDKALK LCTIQQNAKS PNLGCNLQVN DSERSAFAMT 180 DVTDQVRNSA TCYMSSFVDQ QSPHFDNSAA HGTTLAGNLF DLQEALSPHC NLLSSPSFFW 240 TESGLEQFGM IRATSVGAET IAFEDTCFDQ SNPKNVNRFT LADDRRMEEF YGNSQQVD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 5 | 94 | 20 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT109136 | 3e-83 | BT109136.1 Picea glauca clone GQ03205_A18 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FJA2 | 3e-50 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A167V901 | 9e-92 | A0A167V901_PICAB; Transcription factor MYB30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-52 | MYB family protein |