PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00005649-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 251aa MW: 28717.2 Da PI: 10.5998 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.3 | 3.5e-10 | 91 | 135 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e+ ++F++n ps + + L+k+l+Lt rqV +WF+N R+ PSME_00005649-RA 91 ANAVERFRQVFAENELPSMSCKLVLSKQLDLTYRQVHMWFKNARY 135 567888999**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-11 | 76 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.681 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-8 | 82 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.43E-6 | 83 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 83 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-7 | 91 | 135 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MVYSSSNSEQ KMEMPRNEKS NETNLMGEGV VGPKKKIPKE KKAESASLIS SVRVENKSRN 60 TKRKHRRKNI KTPLSISSRN ESKRTMSRLP ANAVERFRQV FAENELPSMS CKLVLSKQLD 120 LTYRQVHMWF KNARYMSLKK KKMNRLKESA APVISANTRR LKVESSKSTP QIKEPDDAGN 180 SYLTEMEKLG NIEFKLESLR KILETFCPKE GADLSNDKNP EGIANLLSEE LLMYVPVVEL 240 REKSLQVAPV R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 7e-16 | pathogenesis related homeodomain protein A |