PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005591-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 477aa    MW: 54119.2 Da    PI: 9.3856
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005591-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.65.5e-132622882551
           G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQ 51 
                        +AtPk +l+lm+vkgLt++hvkSHLQ
  PSME_00005591-RA 262 RRATPKLVLQLMDVKGLTIAHVKSHLQ 288
                       59************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525407.42E-2411180IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.6E-2418175IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000054.0E-818115IPR003439ABC transporter-like
TIGRFAMsTIGR015571.3E-7262289IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.9E-11262288IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEKYLANPIQ WIGKSFDKSM KRRTGFSTQD DVLYPHLTVR ETLTYMGSSQ AAQNLIQIRE  60
EKSYSVIVEL GLNSCGNTLI GPLLRGVSIG ERKIVSIGQE MLINPSRLLL DEPTSDLDPT  120
TAQRIISTLQ NLAKGGRTVI TTIHHPLSRL YHMSNKVILL SEVNPIYYGH VSEAVSYFSS  180
IGFAPSLAMN PVDFMLDLSN GITSNIRLVN LSSEEAESQS RLGHELQNLV RQSLITSYRK  240
NLDTKLKTEV NIEQNYLDTK YRRATPKLVL QLMDVKGLTI AHVKSHLQVG VGLQSKNMEG  300
RDHLLDYYYI LGQAYNYLKI GVKWGKKQEE VKYSILETPF IGLSDKNLQP APVKCNEPIT  360
IDLEQKSLPF QLQRRTTVAA KRKADFGNSR IKLYLTERKK KTKEPNLQMM LKHADDQDQA  420
WSEEEVDSSL SLSLFSKYQE KETESLKLAT SRENKPEPKT FCSKQILIPI NHLESVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5do7_B1e-3329200155328ATP-binding cassette sub-family G member 8
5do7_D1e-3329200155328ATP-binding cassette sub-family G member 8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380400KRKADFGNSRIKLYLTERKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895759.14e-79ABC transporter G family member 21
SwissprotQ9C6W59e-78AB14G_ARATH; ABC transporter G family member 14
TrEMBLA0A0C9S6641e-85A0A0C9S664_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_15471_2810 transcribed RNA sequence
TrEMBLA0A0D6R4J29e-87A0A0D6R4J2_ARACU; Uncharacterized protein
STRINGLus100333153e-80(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.19e-10G2-like family protein
Publications ? help Back to Top
  1. Sánchez-Fernández R,Davies TG,Coleman JO,Rea PA
    The Arabidopsis thaliana ABC protein superfamily, a complete inventory.
    J. Biol. Chem., 2001. 276(32): p. 30231-44
    [PMID:11346655]
  2. Garcia O,Bouige P,Forestier C,Dassa E
    Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems.
    J. Mol. Biol., 2004. 343(1): p. 249-65
    [PMID:15381434]
  3. Sugiyama A, et al.
    Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family.
    DNA Res., 2006. 13(5): p. 205-28
    [PMID:17164256]
  4. Verrier PJ, et al.
    Plant ABC proteins--a unified nomenclature and updated inventory.
    Trends Plant Sci., 2008. 13(4): p. 151-9
    [PMID:18299247]
  5. Le Hir R, et al.
    ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis.
    Plant J., 2013. 76(5): p. 811-24
    [PMID:24112720]
  6. Zhang K, et al.
    Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins.
    Nat Commun, 2014. 5: p. 3274
    [PMID:24513716]
  7. Ko D, et al.
    Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(19): p. 7150-5
    [PMID:24778257]
  8. Borghi L,Kang J,Ko D,Lee Y,Martinoia E
    The role of ABCG-type ABC transporters in phytohormone transport.
    Biochem. Soc. Trans., 2015. 43(5): p. 924-30
    [PMID:26517905]
  9. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  10. Wang S, et al.
    A Role of Cytokinin Transporter in Arabidopsis Immunity.
    Mol. Plant Microbe Interact., 2017. 30(4): p. 325-333
    [PMID:28398838]