PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00005591-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | G2-like | ||||||||
Protein Properties | Length: 477aa MW: 54119.2 Da PI: 9.3856 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 40.6 | 5.5e-13 | 262 | 288 | 25 | 51 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQ 51 +AtPk +l+lm+vkgLt++hvkSHLQ PSME_00005591-RA 262 RRATPKLVLQLMDVKGLTIAHVKSHLQ 288 59************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52540 | 7.42E-24 | 11 | 180 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 3.6E-24 | 18 | 175 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00005 | 4.0E-8 | 18 | 115 | IPR003439 | ABC transporter-like |
TIGRFAMs | TIGR01557 | 1.3E-7 | 262 | 289 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.9E-11 | 262 | 288 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0016887 | Molecular Function | ATPase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MEKYLANPIQ WIGKSFDKSM KRRTGFSTQD DVLYPHLTVR ETLTYMGSSQ AAQNLIQIRE 60 EKSYSVIVEL GLNSCGNTLI GPLLRGVSIG ERKIVSIGQE MLINPSRLLL DEPTSDLDPT 120 TAQRIISTLQ NLAKGGRTVI TTIHHPLSRL YHMSNKVILL SEVNPIYYGH VSEAVSYFSS 180 IGFAPSLAMN PVDFMLDLSN GITSNIRLVN LSSEEAESQS RLGHELQNLV RQSLITSYRK 240 NLDTKLKTEV NIEQNYLDTK YRRATPKLVL QLMDVKGLTI AHVKSHLQVG VGLQSKNMEG 300 RDHLLDYYYI LGQAYNYLKI GVKWGKKQEE VKYSILETPF IGLSDKNLQP APVKCNEPIT 360 IDLEQKSLPF QLQRRTTVAA KRKADFGNSR IKLYLTERKK KTKEPNLQMM LKHADDQDQA 420 WSEEEVDSSL SLSLFSKYQE KETESLKLAT SRENKPEPKT FCSKQILIPI NHLESVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5do7_B | 1e-33 | 29 | 200 | 155 | 328 | ATP-binding cassette sub-family G member 8 |
5do7_D | 1e-33 | 29 | 200 | 155 | 328 | ATP-binding cassette sub-family G member 8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 400 | KRKADFGNSRIKLYLTERKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895759.1 | 4e-79 | ABC transporter G family member 21 | ||||
Swissprot | Q9C6W5 | 9e-78 | AB14G_ARATH; ABC transporter G family member 14 | ||||
TrEMBL | A0A0C9S664 | 1e-85 | A0A0C9S664_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_15471_2810 transcribed RNA sequence | ||||
TrEMBL | A0A0D6R4J2 | 9e-87 | A0A0D6R4J2_ARACU; Uncharacterized protein | ||||
STRING | Lus10033315 | 3e-80 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 9e-10 | G2-like family protein |