PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00005151-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 21751.9 Da PI: 8.6363 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.1 | 1.1e-36 | 15 | 106 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+ap+f +++ +++f +vhk+FGasnv+kll ++p er++a+ +++yeA+ar+rdPvyG+v++i +lqqq+++ + PSME_00005151-RA 15 PCGACKFLRRKCVKGCVFAPHFDSDEgAAHFSAVHKIFGASNVTKLLMHIPMPERSEAVFTITYEAQARLRDPVYGCVAHIYALQQQVASRA 106 7*********************998879***********************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.27 | 14 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-35 | 15 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
GCKFEPCTMS SGGAPCGACK FLRRKCVKGC VFAPHFDSDE GAAHFSAVHK IFGASNVTKL 60 LMHIPMPERS EAVFTITYEA QARLRDPVYG CVAHIYALQQ QVASRAGVRA STASKPRVSG 120 IRVDLRKLSC LSNCISSLHS SPCHVIQATS HTTLTSHIKE ENASDFANST EHKLSMFPSY 180 HSLPQMEVLQ RCRNPGENGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 8 | 102 | 4 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 8 | 102 | 4 | 97 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A9D3 | 4e-73 | D5A9D3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-48 | LOB domain-containing protein 20 |