PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00005146-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23581.7 Da PI: 7.0174 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 7 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+k+Cv+apyf +++ +++fa+vhk+FGasnv+kll ++p er +a+ ++ yeA+ar+rdPvyG+v++i +lqqq+++l+a PSME_00005146-RA 7 PCGACKFLRRKCVKGCVFAPYFGSDEgAAHFAAVHKVFGASNVSKLLLHIPIPERCEAVVTISYEAQARLRDPVYGCVAHIYSLQQQVASLQA 99 7*********************998879***************************************************************** PP DUF260 93 elallkeel 101 ela ++++l PSME_00005146-RA 100 ELAFVQAQL 108 ****99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.112 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-38 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MNGGGAPCGA CKFLRRKCVK GCVFAPYFGS DEGAAHFAAV HKVFGASNVS KLLLHIPIPE 60 RCEAVVTISY EAQARLRDPV YGCVAHIYSL QQQVASLQAE LAFVQAQLSN RVASGSTSTS 120 ANYPVMSTSS YSQHPHQVPA HLSMPHHVIP QPYNARGLCV KEENACGFAN SMDCEFSMSR 180 SDNSSPQMEA LQRCRNLEEI GEDGQELEAL AHALLLRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381331.1 | 8e-61 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024381332.1 | 8e-61 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9SRV3 | 3e-55 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | D5A9D3 | 1e-113 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | PP1S261_2V6.1 | 1e-59 | (Physcomitrella patens) | ||||
STRING | XP_010274825.1 | 6e-60 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-57 | LOB domain-containing protein 20 |