PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00004939-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 24031.9 Da PI: 10.271 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.8e-52 | 54 | 180 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kkv+++ +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky++g+r++ra+ gyWkatg dk++ + PSME_00004939-RA 54 PPGFRFFPTDEELVVHYLCKKVASQIIPV-PIIEEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRPKRAAGFGYWKATGADKPINA 145 9****************************.88***************8777899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl PSME_00004939-RA 146 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 180 966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-57 | 47 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.129 | 53 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-27 | 54 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
DGNSWSSLCK KIPSSLRVMG GIKGLGTIRV DIHLEELCKQ ARDHCALLVH NQWPPGFRFF 60 PTDEELVVHY LCKKVASQII PVPIIEEVDL YKYDPWQLPD KALFGEKEWY FFTPRDRKYP 120 NGSRPKRAAG FGYWKATGAD KPINAKGGKK RVGIKKALVF YAGKAPKGSK TNWIMHEYRL 180 TDVSRSARKK GSLRVSWSIS SLLCFESAVL TT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-69 | 54 | 180 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792530.1 | 2e-80 | NAC domain-containing protein 2-like isoform X1 | ||||
Swissprot | Q9CAR0 | 3e-77 | NAC32_ARATH; NAC transcription factor 32 | ||||
TrEMBL | A0A0D6R3P9 | 4e-88 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_008792530.1 | 7e-80 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-79 | NAC domain containing protein 32 |