PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004827-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 508aa    MW: 55747.6 Da    PI: 6.0977
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004827-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.93.4e-21422470251
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        +++Wt ++H+ Fv+aveqL G ++ +P++ilelmkv+gLt+++v+SHLQ
  PSME_00004827-RA 422 LKVEWTMDMHRPFVQAVEQL-GVDQGIPSRILELMKVDGLTRHNVASHLQ 470
                       5899****************.***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-19419470IPR009057Homeodomain-like
SuperFamilySSF466894.48E-12419471IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-19421471IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGHKCRSHRR HIFPREDEVA SRRYWHHFDP AWTRTKQDEA WSHKGNPAAG PILGYSPVQL  60
HPSPHGTPVG QPLHDFPKGL RVLVLDENTE ATAETKSRLE GFEYVVSTFS NKTGALAVFA  120
NETNSFHVAL VEHFDPGWTR TKQDEACIRK GNPAAGPILG YSPVQLHPTP HGTTVGQPLH  180
DFPKGLRVLV LDEDIEAAAE TKSRLEGFEY VVSTFSNETE ALVVVANETN SFHVALVEVS  240
TVMSSRSCLS TAMKCIAAFS ECGTVLLESL KPIKATILSM LHLGPELTNV KSAQNEDSSD  300
RSKTKASTLH EVQSCTPIPT DSVKQDTSIE PCNSEKFPAP STPQLEQGDV QVVNAPGIAE  360
EEVGSAEASK SDDENIEKEA ILSSYACNEE NVDSSIEDIK GKKNNTEHDC KRSNIASSKK  420
KLKVEWTMDM HRPFVQAVEQ LGVDQGIPSR ILELMKVDGL TRHNVASHLQ VCLDAWGCPT  480
LGMTFYPQPM TLPANHGHRS TPNPNSTI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078847e-45BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-43ARR-B family protein