PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00004776-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 347aa MW: 37565.7 Da PI: 5.579

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00004776-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	2.9e-38	63	122	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds ntkfCyynny+lsqPr+fCkaCrryWtkGG lr vPvGgg+rknkk+ PSME_00004776-RA 63 PSQVLKCPRCDSLNTKFCYYNNYNLSQPRHFCKACRRYWTKGGVLRSVPVGGGCRKNKKT 122 56889*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	61	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-33	65	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.311	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDSDIMLDAM RNLSNNGFAA SSIEMLAAIP DQISVEVPQD SSSLFAAPRN GRLAGERRTR 60 PHPSQVLKCP RCDSLNTKFC YYNNYNLSQP RHFCKACRRY WTKGGVLRSV PVGGGCRKNK 120 KTRPRNPDPM KSSSISPAAS SDSSTVTGTP SSSSSSSHVN TPAGDGTAAL YGFGLELHEA 180 LTERANCNAP AEECSTVPVP PPFNGLAPLD YGSVDAMDQQ IHISPELLNS GDLFDTSLFS 240 FGDLIGSSNL AGVTLADLQW KLQQQQKLAS LFGEESNCNN FDTATAAQSG NNYSNHINNS 300 CSNAIPLHWQ PNNNNMDALF EDLYNWGTET EPMWADQAPI LHPSKIG

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDSDIMLDAM RNLSNNGFAA SSIEMLAAIP DQISVEVPQD SSSLFAAPRN GRLAGERRTR  60
PHPSQVLKCP RCDSLNTKFC YYNNYNLSQP RHFCKACRRY WTKGGVLRSV PVGGGCRKNK  120
KTRPRNPDPM KSSSISPAAS SDSSTVTGTP SSSSSSSHVN TPAGDGTAAL YGFGLELHEA  180
LTERANCNAP AEECSTVPVP PPFNGLAPLD YGSVDAMDQQ IHISPELLNS GDLFDTSLFS  240
FGDLIGSSNL AGVTLADLQW KLQQQQKLAS LFGEESNCNN FDTATAAQSG NNYSNHINNS  300
CSNAIPLHWQ PNNNNMDALF EDLYNWGTET EPMWADQAPI LHPSKIG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT122361	0.0	BT122361.1 Picea sitchensis clone WS0444_E05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5A878	0.0	D5A878_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-34	OBF binding protein 4