PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00004523-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 285aa MW: 31939.9 Da PI: 8.8504

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00004523-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.1	2.8e-33	19	119	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+ ++kC+++Cvlapyfp ++p+kf +h++ G + +kll+++p e+r da++s+vyeA r+rdPv+G++gvi +l+++++ l+ + PSME_00004523-RA 19 SCGACKMSKKKCSENCVLAPYFPLDDPQKFLPIHRVIGKGHAIKLLRDIPAEQRGDAVNSMVYEASQRLRDPVHGCLGVIDDLHKKVAGLQLQ 111 6******************************************************************************************** PP DUF260 94 lallkeel 101 l++++++l PSME_00004523-RA 112 LDSTQAQL 119 *9999875 PP
2	DUF260	119.9	1.4e-37	157	256	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+ r+kC+++Cvlapyfp ++p+kf vh++FG +v+kll++lp+e+r da++s+vyeA r +dPv+G+v++i++lq+++++l++ PSME_00004523-RA 157 SCGACKINRKKCPEKCVLAPYFPLDDPHKFLLVHRVFGKGHVIKLLRDLPTEQRGDAVRSMVYEASQRHQDPVHGCVRIINDLQKKVAELQQR 249 6******************************************************************************************** PP DUF260 94 lallkee 100 l++++++ PSME_00004523-RA 250 LDSTQAQ 256 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.829	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-32	19	116	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	23.49	156	257	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-36	157	254	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MNYEIVLQMR NTETPSTVSC GACKMSKKKC SENCVLAPYF PLDDPQKFLP IHRVIGKGHA 60 IKLLRDIPAE QRGDAVNSMV YEASQRLRDP VHGCLGVIDD LHKKVAGLQL QLDSTQAQLA 120 KISLQHANLL TLVTKSHEAL MMNNITARRA ETPSTFSCGA CKINRKKCPE KCVLAPYFPL 180 DDPHKFLLVH RVFGKGHVIK LLRDLPTEQR GDAVRSMVYE ASQRHQDPVH GCVRIINDLQ 240 KKVAELQQRL DSTQAQFANI SLQHDNLLTL VKNNHEGLVT NSNEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-30	20	257	12	115	LOB family transfactor Ramosa2.1
5ly0_B	6e-30	20	257	12	115	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010458003.1	2e-41	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9LQR0	2e-40	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	6e-40	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2H5NZ65	5e-78	A0A2H5NZ65_CITUN; Uncharacterized protein
STRING	XP_010458003.1	8e-41	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-42	LOB domain-containing protein 1