PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004493-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 326aa    MW: 37639.1 Da    PI: 6.6024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004493-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-083252346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                      +W++Ia +++ gRt++++k++w++
  PSME_00004493-RA  3 RWSLIAGRLP-GRTDNEIKNYWNT 25
                      4*********.***********97 PP

2Myb_DNA-binding48.22.4e-15110157148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT+ Ed +l +++k +G g W++ +++ g++R++k+c++rw++yl
  PSME_00004493-RA 110 RGAWTASEDNILSEYIKNHGDGGWRSLPNRAGLKRCAKSCRLRWLNYL 157
                       89********************************************97 PP

3Myb_DNA-binding27.47.6e-09163193132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                       rg+ ++eEdel v+++++lG++ W++Ia +++
  PSME_00004493-RA 163 RGNISPEEDELVVRLHRLLGNR-WSLIAGRLP 193
                       7899******************.*****9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.165131IPR017930Myb domain
SMARTSM0071788129IPR001005SANT/Myb domain
PfamPF002497.0E-6325IPR001005SANT/Myb domain
SuperFamilySSF466893.9E-7336IPR009057Homeodomain-like
CDDcd001672.02E-5327No hitNo description
Gene3DG3DSA:1.10.10.601.5E-11327IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-20104160IPR009057Homeodomain-like
PROSITE profilePS5129421.34105161IPR017930Myb domain
SMARTSM007173.6E-11109159IPR001005SANT/Myb domain
PfamPF002493.9E-14110157IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-22111188IPR009057Homeodomain-like
CDDcd001673.79E-8112157No hitNo description
Gene3DG3DSA:1.10.10.604.3E-13161193IPR009057Homeodomain-like
PROSITE profilePS512947.575162207IPR017930Myb domain
SMARTSM007170.0012162205IPR001005SANT/Myb domain
PfamPF002491.3E-6163193IPR001005SANT/Myb domain
CDDcd001670.0011167194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVRWSLIAGR LPGRTDNEIK NYWNTRLSKR VRMGEFEPKF QKINKRSSDI PSSSEKEDVD  60
KENYTAQTLP LKTKAVRYSG RTVADIFKYD HMMGRSPSSS KHDQDRSLNR GAWTASEDNI  120
LSEYIKNHGD GGWRSLPNRA GLKRCAKSCR LRWLNYLRPD IKRGNISPEE DELVVRLHRL  180
LGNRWSLIAG RLPDIYKYDH VVQDTHDGIN QEEVCLKAAD NDVQEIDTSK SWSQLMVEDC  240
MEDYQQDRLE EINGLQPNSM IINTNNGTYD HHQFPSPSLS QSIIVQENSS SSYCNLINQE  300
FPHSKDFNCS YFDSFLDLGE LSILLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-14108193589B-MYB
1h8a_C3e-1410819325109MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8104402e-90JF810440.1 Picea abies TT2-like protein mRNA, complete cds.
GenBankKU1312182e-90KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324191.37e-57transcription factor MYB74
TrEMBLA0A2H4Z0B06e-80A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-44myb domain protein 3