PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00004493-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 37639.1 Da PI: 6.6024 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.3e-08 | 3 | 25 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia +++ gRt++++k++w++ PSME_00004493-RA 3 RWSLIAGRLP-GRTDNEIKNYWNT 25 4*********.***********97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.4e-15 | 110 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l +++k +G g W++ +++ g++R++k+c++rw++yl PSME_00004493-RA 110 RGAWTASEDNILSEYIKNHGDGGWRSLPNRAGLKRCAKSCRLRWLNYL 157 89********************************************97 PP | |||||||
3 | Myb_DNA-binding | 27.4 | 7.6e-09 | 163 | 193 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+ ++eEdel v+++++lG++ W++Ia +++ PSME_00004493-RA 163 RGNISPEEDELVVRLHRLLGNR-WSLIAGRLP 193 7899******************.*****9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.165 | 1 | 31 | IPR017930 | Myb domain |
SMART | SM00717 | 88 | 1 | 29 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-6 | 3 | 25 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.9E-7 | 3 | 36 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-5 | 3 | 27 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 3 | 27 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 104 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.34 | 105 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-11 | 109 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 110 | 157 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.45E-22 | 111 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.79E-8 | 112 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-13 | 161 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.575 | 162 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0012 | 162 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-6 | 163 | 193 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.0011 | 167 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MVRWSLIAGR LPGRTDNEIK NYWNTRLSKR VRMGEFEPKF QKINKRSSDI PSSSEKEDVD 60 KENYTAQTLP LKTKAVRYSG RTVADIFKYD HMMGRSPSSS KHDQDRSLNR GAWTASEDNI 120 LSEYIKNHGD GGWRSLPNRA GLKRCAKSCR LRWLNYLRPD IKRGNISPEE DELVVRLHRL 180 LGNRWSLIAG RLPDIYKYDH VVQDTHDGIN QEEVCLKAAD NDVQEIDTSK SWSQLMVEDC 240 MEDYQQDRLE EINGLQPNSM IINTNNGTYD HHQFPSPSLS QSIIVQENSS SSYCNLINQE 300 FPHSKDFNCS YFDSFLDLGE LSILLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-14 | 108 | 193 | 5 | 89 | B-MYB |
1h8a_C | 3e-14 | 108 | 193 | 25 | 109 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF810440 | 2e-90 | JF810440.1 Picea abies TT2-like protein mRNA, complete cds. | |||
GenBank | KU131218 | 2e-90 | KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324191.3 | 7e-57 | transcription factor MYB74 | ||||
TrEMBL | A0A2H4Z0B0 | 6e-80 | A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-44 | myb domain protein 3 |