PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00004490-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 137aa MW: 15879 Da PI: 10.9705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g W++ +++ g++R++k+c++rw++yl PSME_00004490-RA 19 RGAWTASEDKILSEYIKNHGDGGWRSLSNRAGLKRCAKSCRLRWLNYL 66 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eEdel v+++++lG++ W++Ia +++ gRt++++k++w++ PSME_00004490-RA 72 RGNISPEEDELVVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 115 7999******************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.67 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-28 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-8 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 26.678 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 72 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 73 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.33E-11 | 76 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
IMGRSPSSSK HDQDRSLNRG AWTASEDKIL SEYIKNHGDG GWRSLSNRAG LKRCAKSCRL 60 RWLNYLRPDI KRGNISPEED ELVVRLHRLL GNRWSLIAGR LPGRTDNEIK NYWNTQLSKR 120 VHKGRLPGRT DNEIKNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 16 | 121 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131218 | 1e-121 | KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022756428.1 | 4e-63 | transcription factor MYB7-like | ||||
Refseq | XP_023899027.1 | 5e-63 | transcription factor TT2-like | ||||
Swissprot | Q9S9K9 | 5e-54 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A2H4Z0B0 | 6e-71 | A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor | ||||
STRING | XP_004287618.1 | 2e-62 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-56 | myb domain protein 3 |