PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004378-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 336aa    MW: 38556.1 Da    PI: 5.4987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004378-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.73.7e-431272552128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        pGfrF Pt+eelv +yL+++v+++   l+++ +i+++d+y+++Pw+Lp  +++a+e++w+fF++rd+k++   r+nr ++sgyWkatg+d++
  PSME_00004378-RA 127 IPGFRFYPTEEELVGFYLRRRVQASGdpLNFDIIIPTLDLYSYDPWELPgFAHDAGETQWFFFVPRDQKKS-CPRPNRLAASGYWKATGSDRA 218
                       69*******************9988755777667***************768888999**********986.58****99************* PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v +   + +glkk+Lvfykg+ p g+ktdW+m+eyr+
  PSME_00004378-RA 219 VRNDLLQCIGLKKILVFYKGKGPAGQKTDWIMNEYRM 255
                       ***99999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-46122276IPR003441NAC domain
PROSITE profilePS5100550.762126276IPR003441NAC domain
PfamPF023657.2E-24128255IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNMLEMTLDE KQVMEWTPFT CVDLSSSPPI PTASSNPHWQ SILWNIFKLE VNSPENFPTY  60
LDTFILCAEP VNSLDRFSKL STDAFYLFKS RELYEGIHLS GSFLKVDMAM LDEVYDDGAV  120
QGDLRVIPGF RFYPTEEELV GFYLRRRVQA SGDPLNFDII IPTLDLYSYD PWELPGFAHD  180
AGETQWFFFV PRDQKKSCPR PNRLAASGYW KATGSDRAVR NDLLQCIGLK KILVFYKGKG  240
PAGQKTDWIM NEYRMPDINS SPKKMQDIVL CRIYRKATSQ KWMDKRATPN PVGKEEAVAA  300
GDKYEKKSHS IYYPEAELNP MNPMPVTVDF SPVQCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4212428115170NO APICAL MERISTEM PROTEIN
1ut4_B2e-4212428115170NO APICAL MERISTEM PROTEIN
1ut7_A2e-4212428115170NO APICAL MERISTEM PROTEIN
1ut7_B2e-4212428115170NO APICAL MERISTEM PROTEIN
4dul_A2e-4212428115170NAC domain-containing protein 19
4dul_B2e-4212428115170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A075M5N54e-94A0A075M5N5_9SPER; NAC domain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.16e-55NAC domain containing protein 35