PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00004377-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 169aa MW: 19944.2 Da PI: 8.8742 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.1 | 1.3e-43 | 25 | 151 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eel+++yLkk+v+g + l+l+ +i+++d+y+++Pw+Lp + + +e++w+fF++rd+k++ r+nr t+sgyWkatg+dk++ PSME_00004377-RA 25 PGFRFYPTEEELLSFYLKKRVRGCHqLNLDIIIPTLDLYQYDPWQLPgFANDIGERQWFFFVPRDHKKS-CPRPNRLTASGYWKATGSDKAIR 116 9*********************9885777667***************656667999**********986.58********************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkk Lvfykg+ap g+ktdW+m+eyr+ PSME_00004377-RA 117 NELLQCIGLKKFLVFYKGKAPCGRKTDWIMNEYRM 151 *99999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 44.371 | 23 | 169 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.5E-44 | 23 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-24 | 25 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MALQEEIHND GKVQGQEIME IMDLPGFRFY PTEEELLSFY LKKRVRGCHQ LNLDIIIPTL 60 DLYQYDPWQL PGFANDIGER QWFFFVPRDH KKSCPRPNRL TASGYWKATG SDKAIRNELL 120 QCIGLKKFLV FYKGKAPCGR KTDWIMNEYR MPDFRLSAPK VTIFPLIFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-39 | 25 | 151 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-39 | 25 | 151 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-39 | 25 | 151 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-39 | 25 | 151 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
3swm_B | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
3swm_C | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
3swm_D | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
3swp_A | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
3swp_B | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
3swp_C | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
3swp_D | 4e-39 | 25 | 151 | 22 | 145 | NAC domain-containing protein 19 |
4dul_A | 3e-39 | 25 | 151 | 19 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-39 | 25 | 151 | 19 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598401.1 | 2e-55 | NAC domain-containing protein 35-like, partial | ||||
Swissprot | Q9ZVP8 | 1e-50 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A075M5N5 | 7e-84 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | Migut.N00873.1.p | 2e-51 | (Erythranthe guttata) | ||||
STRING | XP_008791987.1 | 2e-52 | (Phoenix dactylifera) | ||||
STRING | GSMUA_Achr10P04320_001 | 7e-52 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 3e-53 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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